Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03687 424 / 3e-148 DTW domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018590 [exp] 610 / 0 AT1G03687 410 / 3e-142 DTW domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G132100 [exp] 461 / 9e-163 AT1G03687 458 / 2e-161 DTW domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03942 [flax] [poplar] DTW DTW domain
Representative CDS sequence Show only first row Show all	>Lus10039823 pacid=23165008 polypeptide=Lus10039823 locus=Lus10039823.g ID=Lus10039823.BGIv1.0 annot-version=v1.0 ATGGATTCCCCACCCAGAACATTCTCCAATTCACCGGCACGCTCTTCGGCCGGACACTCAGACGGCGGAGGCGGCGGGTCGATAACGTTGCAGGAGTGGC AGGGATGGGGCGCCGCGTCTCCGATACCATCCAAGGTCTTGGAGGTCATCGACGATTTGAAGCTTCTCGAGTCAAATATCGATGCCCAGATGAGGTTCGG TGGTTCCGGAGGGAAACTCAAGGGAGATTTTAGAACTCATGAAGAGAAAAAGCACAGGGCAAAGTATGAAGCTTTGGATGGTCCTGAGAACAAGATCCAG TTCTTTTCAGCTCGGCAAATTGCTTGCAGATTGCTTGGGAGTAGAGGCTATCTTTGCCTGAAGTGCTGGCTTCCTATGGAAGAAGACTGCATGTGTTCAC AACTGAAGCCGTGTGCTTTGTGGCCCGGGATTCGGTTCTGGGTATATATGCATCCAAAGGACTTCCTAAGACAGAACAACACTGGGAAGCTACTGTGGCA AGTATTCGGAGCAAGTTCGGCTACCCTTTGCCTTTATGGTATATCCGAAGATGAGGAGATCATGTGGAATGCCTTTAAAGCTGCAGGCAAAAACAAGGTC TGGTGTCTGTATCCTAACAAAAATGCTGTGACAAAATCGGTCCCTGAAGCTTTTGGTCAAGAATCTATAGCAAATCACGAGATCATTCAAGATCCGTCAA ATCCAGATAAAGCCTTAAACTTTCTGTTGATTGATGGCACATGGAACAATTCTGCTGCAATGTTCAGACGCTTGAAGGAGAAGTCGAAATCCACGTGGGG GGACGAGGAGGATCTTCCTTGCATTTCCTTGGCAACCGGAGTATCGACAATGCACAAACTCAGGCCGCAACCATCGTGGGATCGTACATGTACAGCAGCA GCAGCTGCAGGGCTGCTGTTTGAACTTCACGAACTAGCCGGGTTCAGCTGCATTGGCCTGCAGAAGCAAGGCGAAGCATTGGAGAATAACCTCGCCGCGC TTTTAGAAGCTCTAACAACTCGTCGGCTTAGGATGGGCCGGTCTGTAACCCGGACAGTTAAGACGCAACACCGGAGTTTGCTGATGAACTAG
AA sequence Show only first row Show all	>Lus10039823 pacid=23165008 polypeptide=Lus10039823 locus=Lus10039823.g ID=Lus10039823.BGIv1.0 annot-version=v1.0 MDSPPRTFSNSPARSSAGHSDGGGGGSITLQEWQGWGAASPIPSKVLEVIDDLKLLESNIDAQMRFGGSGGKLKGDFRTHEEKKHRAKYEALDGPENKIQ FFSARQIACRLLGSRGYLCLKCWLPMEEDCMCSQLKPCALWPGIRFWVYMHPKDFLRQNNTGKLLWQVFGASSATLCLYGISEDEEIMWNAFKAAGKNKV WCLYPNKNAVTKSVPEAFGQESIANHEIIQDPSNPDKALNFLLIDGTWNNSAAMFRRLKEKSKSTWGDEEDLPCISLATGVSTMHKLRPQPSWDRTCTAA AAAGLLFELHELAGFSCIGLQKQGEALENNLAALLEALTTRRLRMGRSVTRTVKTQHRSLLMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03687			DTW domain-containing protein ...		Lus10039823 [exp]	0	1
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	13.7	0.8158
AT1G15420			unknown protein		Lus10007894 [exp]	14.1	0.8262
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	19.9	0.8276
AT1G08220			unknown protein		Lus10021398 [exp]	21.0	0.8094
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	23.7	0.8279
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10009823 [exp]	24.2	0.8075
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	28.0	0.8237
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10030656 [exp]	37.6	0.7982
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10024249 [exp]	37.8	0.7543
AT4G04190			unknown protein		Lus10020577 [exp]	40.5	0.7823

Compare expression of checked genes

Lus10039823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.