Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018591 [exp] 0 / 1 ND 39 / 1e-04
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039824 pacid=23165227 polypeptide=Lus10039824 locus=Lus10039824.g ID=Lus10039824.BGIv1.0 annot-version=v1.0 ATGTTCGACAGCAACGACTCGGCCCGATTCTACGCTTTCGCGTGGCTGAAGAGTCGCGGCGGGCAGCGTTTCCGCCGTTCCACCGGCGGCGGAACGTGGG AGCTCAAGAACAGCACCCTGTTCGCAGAGGACGGCCGGTTTCTGAAGCGGAACCTTGTGTATGAATACAAAGACAAACGGAAGGACGAGGTGATCACCGG CCAGTGGTCGATGGTAGAGTTCTCGCTTCAGGGAGCGGCGGATAAAGATTTTGTTGTGTGTAAAGTCCGGTTTAACCATTGCCGGAAGCAGAGTCGTCAC AGTCGTCTCGGTGGGCGGAGTGGTAATGTGGCTGGTTTCTCGCCGGCGGTGGGAGGGTTGAAGATTACGGAGAGGGCGGCGGCGGAAACAGGGGAAGTCA AAATTAGGGCAGAGGATAAGCAATCGGAGGAATTTGATTTTGACTTGGAGTCAAGAGAGGAGATTCTAACGTTGACTGAGAATTTTTGGAGTGAACCGCC GGGTAATATTTGGTTGACCATGAGTTGGAACGGTGTCGTTATAACGTCTTGTGTTCATTGTTGTTAG
AA sequence Show only first row Show all	>Lus10039824 pacid=23165227 polypeptide=Lus10039824 locus=Lus10039824.g ID=Lus10039824.BGIv1.0 annot-version=v1.0 MFDSNDSARFYAFAWLKSRGGQRFRRSTGGGTWELKNSTLFAEDGRFLKRNLVYEYKDKRKDEVITGQWSMVEFSLQGAADKDFVVCKVRFNHCRKQSRH SRLGGRSGNVAGFSPAVGGLKITERAAAETGEVKIRAEDKQSEEFDFDLESREEILTLTENFWSEPPGNIWLTMSWNGVVITSCVHCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039824 [exp]	0	1
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10042200 [exp]	3.2	0.9055
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	8.1	0.9031
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	10.6	0.8978
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	13.2	0.8903
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	27.5	0.8984
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031158 [exp]	40.7	0.8660
					Lus10010270 [exp]	41.1	0.8667
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038526 [exp]	47.9	0.8871
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10032654 [exp]	59.7	0.8648
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	68.5	0.8049

Compare expression of checked genes

Lus10039824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.