Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20690 217 / 1e-69 lumazine-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017000 [exp] 312 / 1e-106 AT2G20690 282 / 2e-95 lumazine-binding family protein (.1) Lus10021323 [exp] 303 / 7e-103 AT2G20690 276 / 6e-93 lumazine-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100500 [exp] 240 / 2e-78 AT2G20690 325 / 1e-112 lumazine-binding family protein (.1) Potri.013G131800 [exp] 238 / 1e-77 AT2G20690 323 / 1e-111 lumazine-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00677 [flax] [poplar] Lum_binding Lumazine binding domain
Representative CDS sequence Show only first row Show all	>Lus10039826 pacid=23165017 polypeptide=Lus10039826 locus=Lus10039826.g ID=Lus10039826.BGIv1.0 annot-version=v1.0 ATGAAGGAAGCTAAACCCTGCGTGCATGAGCCACGTCAATCGAAACGGCATTGTTCATGCCGTTTAATGGTTCCAAATAAATTATCAACCCTAAGAATTT ACCTCCAGAAATCCAAACAAAAATGGCGCTCCAATTGTCTCTCACAACGCCGATCAATTCACCGGCGATCGCCTCCGGAAGAAACCGATTACCACCAAAA ACCACAAACACAGCACTCAATTTCTCACCAATCACCACCCCACACCTCAAATCCATCCCTTCCTCCTTCTTCATCAATTCAATCCCAATCTCCAGATCCA ACCACCACCCACGATCCACCTCAACAATCACCTGCCTCTTCACCGGGATCGTGGAAGAGATCGGCGAAGTCAAACGCCTGGGCACAACCTCCGACGGCAC CGGCTAAAACCGTCCTCGACGGAGTCAACTTAGGAGACAGCATCGCCGTTAACGGAACCTGCCTAACGGTGACAGAGTTCACGGAAAACGAATTAACAAC GGGAATATCCCCAGAGACTCTGAGAAAGACGTCACTGTTAGGTCTCCAGCCCGGGTCGCGGGTCAATTTGGAGCGGGCGGTCCAGCCGACGACCCGGATG GGTGGCCATTTCGTGCAGGGACACGTGGGCTGTACAGGGGAGATTCTGAGCAAGGAGAAAGAAGGGGATTCGCTGTGGATTAAGGTTGAAGTTGGGGATA AGAAAGTGTTGAGGTACATTGTGCCGAAGGGTTTTATTGCTGTCGACGGGACGAGCTCGACGGTGGTGGATGTGGATGAAGAAGGAGGGTGGTTTAATTT CATGCTGGTGGCTTATACGCAGGGGGAGGTTGTGATTCCGGGGAAGGAAGTTGGGGAGAAGGTGAATTTGGAGGTTGACATATTGGGGAAGTATGTGGAA AGGCTTATGAGCTGTGGGAGTCGTTGA
AA sequence Show only first row Show all	>Lus10039826 pacid=23165017 polypeptide=Lus10039826 locus=Lus10039826.g ID=Lus10039826.BGIv1.0 annot-version=v1.0 MKEAKPCVHEPRQSKRHCSCRLMVPNKLSTLRIYLQKSKQKWRSNCLSQRRSIHRRSPPEETDYHQKPQTQHSISHQSPPHTSNPSLPPSSSIQSQSPDP TTTHDPPQQSPASSPGSWKRSAKSNAWAQPPTAPAKTVLDGVNLGDSIAVNGTCLTVTEFTENELTTGISPETLRKTSLLGLQPGSRVNLERAVQPTTRM GGHFVQGHVGCTGEILSKEKEGDSLWIKVEVGDKKVLRYIVPKGFIAVDGTSSTVVDVDEEGGWFNFMLVAYTQGEVVIPGKEVGEKVNLEVDILGKYVE RLMSCGSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20690			lumazine-binding family protei...		Lus10039826 [exp]	0	1
AT5G49525			unknown protein		Lus10017078 [exp]	2.8	0.9542
					Lus10015413 [exp]	5.2	0.9558
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	5.2	0.9512
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	10.2	0.9473
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	11.0	0.9446
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	16.4	0.9366
AT4G31830			unknown protein		Lus10010682 [exp]	23.2	0.9227
AT3G26100			Regulator of chromosome conden...		Lus10036945 [exp]	23.5	0.9423
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	27.7	0.9337
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	30.6	0.9324

Compare expression of checked genes

Lus10039826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.