Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28300 258 / 5e-80 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) AT5G14540 89 / 1e-18 Protein of unknown function (DUF1421) (.1) AT3G01560 79 / 2e-15 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018593 [exp] 726 / 0 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10033692 [exp] 330 / 1e-107 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 329 / 4e-107 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10014549 [exp] 85 / 3e-17 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1) Lus10032138 [exp] 85 / 3e-17 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G095400 [exp] 407 / 4e-137 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 384 / 3e-128 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.001G348500 [exp] 79 / 3e-15 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 72 / 3e-13 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 68 / 8e-12 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10039827 pacid=23165126 polypeptide=Lus10039827 locus=Lus10039827.g ID=Lus10039827.BGIv1.0 annot-version=v1.0 ATGGCTTCTGGATCGTCTGGACGGCCCAGCTCGGGTTCCAAGGGATTCGAGTTCGACTCCGATGACATCCTCTGCTCCTACGATGACTACTCCAATCAGG AAACTCCTAACGGGAATCACTCCGATCCCATTCCCGCTCCCGCTCCTAATTCCTCCAAGGGTTTTGAGAAAAGCAGGATGTCTCGATCATCTGTGTACCA ACCTGCTTCGTATGGTCAGCCTGATGATTCGTTCCACCAAGAGGTGATCTCTGCAGTGGAGAGGAGCATGAAACGGCATTCAGAAAACCAGATGCGGTTT CTGGAGGGAATCAGTTCGCGGCTATCCCAGCTGGAGCTGTACTGCTACAATCTCGATAAATCGATCGGCGAGATGCGATCCGATTTGACCCGTGACCATA CCGAGACAGATATGAAGCTAAAAGCCGTTGAGAAGCATCTTCATGAGGTCCATAGATCTGTTCAGATTCTAAGGGATAAGCAAGAGCTTGCTGAAACCCA AAAGGAGCTAGCTAAGCTTCATCTTGTCCAGAAGGAATCCACTTCTTCACACCATTCACAATCTAACGACGAAAGGGCTGCATCGCCTGCTTTCGATCCG AAAAAGAACGACAACACCGCTGAAGGACACAACAACCAACAATTGGCTCTTGCTCTTCCGCAGCAAGTTGCACCTCAACAGCAACAGATATCTGCTCCTC CACCGCCCTCTCATGTCCCACACCAGAATCTGGCTCAAGGACAACCTCAGACTTACTATCTATCACCAGGGCAGTTAGCTGTTGCGCCTCCCTCACAGTC CCAGCCACCTCACAGCCAGTATATGACTCCTGATCCACAATACCGACCAAACCAAATGCAGGGGATGCAATCGCAGCCAGTTCCAGTACAAGCTAGTCAG GCGCCTCCTCCGCCAAATCAGCTATATCCTCAGTATCAACAGCAGTGGCCTCCTCAGCAAGTTCAAGTACAACAAACTCAGCAGCCAGCAATGCAGACTC AAGTCAGGCAGCAATCAAACACAGTTTATCAAGAGACATTGCCGAGCAGCATGCCTATGCCAGCATCATACTCCACAGTTCCACAGCCTTTATCAAGCCG TGTTGATACCATACAATACGGATACGGAACCGGGAGACCAGCTCCTCAGCAGCTTCCACCTCAGCAGATGAAGGTCCCGTATGGAGCCCAACCCGGCGAC AGCTTCACAACACCTGGACCGCACGGTGCTACGTATGTGGTTTACGACACCGAAGGAGGTAGTAGACCCCACCCTCCGGCTCACTTCTCGCAAGGTGGAT ACTCCAACTCCCTCCCAGGTGGTGCGGTGGCTTCTCCTAACATGATGCCCCGGAACCCTACTCCACCGCCCCAGTTTGTCCGCAGCCATCCTTACAACGA GCTGATCGAGAAGCTGGTCAGCATGGGGTTCCGAGGCGACCATGTCATGGGCGTCATCCAGAGGATGGAGGAGACCGGGCAGCCCGTGGATTTCAATGCG GTGATCGATAGGTTGAACGTCCACCCTCCTTCCGGCACCAGCTCTCAGAGAGTATGGTCGGGATGA
AA sequence Show only first row Show all	>Lus10039827 pacid=23165126 polypeptide=Lus10039827 locus=Lus10039827.g ID=Lus10039827.BGIv1.0 annot-version=v1.0 MASGSSGRPSSGSKGFEFDSDDILCSYDDYSNQETPNGNHSDPIPAPAPNSSKGFEKSRMSRSSVYQPASYGQPDDSFHQEVISAVERSMKRHSENQMRF LEGISSRLSQLELYCYNLDKSIGEMRSDLTRDHTETDMKLKAVEKHLHEVHRSVQILRDKQELAETQKELAKLHLVQKESTSSHHSQSNDERAASPAFDP KKNDNTAEGHNNQQLALALPQQVAPQQQQISAPPPPSHVPHQNLAQGQPQTYYLSPGQLAVAPPSQSQPPHSQYMTPDPQYRPNQMQGMQSQPVPVQASQ APPPPNQLYPQYQQQWPPQQVQVQQTQQPAMQTQVRQQSNTVYQETLPSSMPMPASYSTVPQPLSSRVDTIQYGYGTGRPAPQQLPPQQMKVPYGAQPGD SFTTPGPHGATYVVYDTEGGSRPHPPAHFSQGGYSNSLPGGAVASPNMMPRNPTPPPQFVRSHPYNELIEKLVSMGFRGDHVMGVIQRMEETGQPVDFNA VIDRLNVHPPSGTSSQRVWSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28300			Protein of unknown function (D...		Lus10039827 [exp]	0	1
AT4G28300			Protein of unknown function (D...		Lus10018593 [exp]	1.0	0.9678
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Lus10027648 [exp]	11.5	0.8039
AT4G13330			S-adenosyl-L-methionine-depend...		Lus10023725 [exp]	12.7	0.6825
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	14.7	0.7581
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	21.9	0.7637
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	26.5	0.7290
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	26.9	0.7192
AT1G76600			unknown protein		Lus10012442 [exp]	27.6	0.7477
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	42.4	0.7026
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	42.8	0.7398

Compare expression of checked genes

Lus10039827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.