Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03560 907 / 0 FOU2, ATCCH1, ATTPC1 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018594 [exp] 707 / 0 AT4G03560 471 / 2e-159 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131100 [exp] 960 / 0 AT4G03560 946 / 0.0 FATTY ACID OXYGENATION UPREGULATED 2, CALCIUM CHANNEL 1, two-pore channel 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [flax] [poplar] Ion_channel PF00520 [flax] [poplar] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Lus10039829 pacid=23165341 polypeptide=Lus10039829 locus=Lus10039829.g ID=Lus10039829.BGIv1.0 annot-version=v1.0 ATGGAGAGTCCTCTGCTGGGGGAGACCAGCGACCAAAGCCGATACCGTTCGGATCACATCTTCCGACGCCGCGCCGACGCCATTGCTTACGGCTCCAACT TCCAGCGCGCAGCTGCTCTCGTTGATCTGGCGGAAGATGGAGTTGGCTTACCGGAGCAGATTCTCGACCACTCCAGCTTTGGAGCTGCAGCGAAGAATTA CTTTGTGTTTATTAAGTTTGAATTTATCTGGACGCTTAACTACTTTGCTCTAGTTCTGCTGAATTTCTTGGAGAAACCGCTTTGGTGTGCAAACTGTACT TCGGATTGCTGTCAAGATAGAGATTTCTTCTACTTAGGACAGTTGCCATACTTGAACAGCTTGGAGACCCTTATCTACGAGGCTATTACTTTCATTATAC TCATTGTTCACATTTTCTTCCCACTTTCATATGAAGGCCCCCTGATTTTCTGGAAAAGTGCTCTAAATTGGTTCAAGGTTGTTTGCCTTGCAATCTTGGT TGCTGATTTACTAGTTTATGGCCTCTACTTGTCTCCAGTGGCCTTCAGTGTTCTTCCAGTCAGGATTGCTCCGTATATAAGAGTTGTCTTTTTCATTCTG AGTATCAGGGACTTGCAGAAGAGCATCATAATCCTGGCTGGAATGCTTTGGACCTACTTAAACATCTTGGCGCTGTGGCTCCTGTTTCTTCTGTTTTCTA GTTGGGTGGCCTATGTCATGTTTGAAGATACTGAGCAAGGGAGAACAGTATTTACATCATATGCCATCACATTGTATCAGATGTTTGTCTTGTTTACAAC ATCTAACAATCCAGATGTGTGGATACCTGCATATAAAGAATCACGATGGTATTCCCTGTTCTTTGTTATCTACGTGCTACTGGGAGTCTACTTTGTCACC AACTTGATTCTTGCCGTTGTGTATGATAGCTTCAAAAATCAGCTTGTGAAACAAGTTGCTGAGGCAGACAACATGAGGAAAAGAACGTTGATGAAAGCCT TCAATCTCATTGATAGATTTGGTGTTGGATATCTCGATAAAGAACAGTGTATCCGTTTGTTTGAAGAACTTAATCAGTACAGGACTCTTCCAAAGATCTC AAGAGAAGAATTTGAGTTAATATTCACTGAGCTTGATGATAGTGGTGATTTTAAGATAAACTTGGATGAATTTGCCGACCTCTGCCATGCCATTGCTTTA AGATTCCACAAGGAAGATGTTGAATCCTACTTCGAATACTTTTCCAATGTCTACCATGCACCATTGTCTGAGAAGCTAAAAGACTTTGTGAAACGCCCTA TATTCGGATATATAATATCCTTCATTCTTGTCGTCAATCTTGTCGCTGTGATCATCGAAACAACGCTTGATATAGCAGACAATTCTGGTCAAAAGGCCTG GCAAGTGGCAGAGTTTGTATTTGGATGGATCTATGTGCTAGAAATGCTGTTGAAAGTTTATTCATATGGATTCGCAAATTATTGGAGGGATGGACAGAAT CGATTTGATTTTCTCATCACTTTAATCATTGTTATTGGAGAAACCGCGACTTTCGTATCTCCAGACGCTCAGACATTCTTCTCAAATGGAGAATGGATTC GTTACCTCCTACTTGCCCGAATGTTAAGATTACTTAGGCTGTTGATGTATGTAAAAAGTTACCAAGCTTTTCTTGCCACATTTTTAACCCTCATCCCAAG TCTGATGCCATATTTGGGAACAATATTTTGCATCCTATGCATATATTGTTCTCTTGGCGTCCAGATCTTTGGCGGAATTGTTAATGCTGGAAACCTCAAT TTGAACGCCACGGATCTTGCTGATAATGATTATCTACTTTTCAATTTTAACGACTACCCGAATGGGATGGTGACTCTCTTTAATCTGCTCGTCATGGGAA ATTGGCAAGTCTGGATGCAGAGCTACACAGAATTGACTGGCAACCGTTGGACTGTTGCTTACTTCATCAGCTTCTACCTAATTACGGTTCTACTCCTCTT GAATTTGGTTGTTGCTTTTGTCTTGGAGGCATTCTTCGCTGAAATGGAACTCGAATCCTCCGAGGAAGAAGATGATGATTCCAGCAACACAAAGCCTCGT ACCCGATATATGGGCACGAAAACTCGTAGTCAGAGAGTTGACGTTCTTCTCCATCATATGTTAAGTTCAGAGCTGAAAACAGCCGACTGCTGA
AA sequence Show only first row Show all	>Lus10039829 pacid=23165341 polypeptide=Lus10039829 locus=Lus10039829.g ID=Lus10039829.BGIv1.0 annot-version=v1.0 MESPLLGETSDQSRYRSDHIFRRRADAIAYGSNFQRAAALVDLAEDGVGLPEQILDHSSFGAAAKNYFVFIKFEFIWTLNYFALVLLNFLEKPLWCANCT SDCCQDRDFFYLGQLPYLNSLETLIYEAITFIILIVHIFFPLSYEGPLIFWKSALNWFKVVCLAILVADLLVYGLYLSPVAFSVLPVRIAPYIRVVFFIL SIRDLQKSIIILAGMLWTYLNILALWLLFLLFSSWVAYVMFEDTEQGRTVFTSYAITLYQMFVLFTTSNNPDVWIPAYKESRWYSLFFVIYVLLGVYFVT NLILAVVYDSFKNQLVKQVAEADNMRKRTLMKAFNLIDRFGVGYLDKEQCIRLFEELNQYRTLPKISREEFELIFTELDDSGDFKINLDEFADLCHAIAL RFHKEDVESYFEYFSNVYHAPLSEKLKDFVKRPIFGYIISFILVVNLVAVIIETTLDIADNSGQKAWQVAEFVFGWIYVLEMLLKVYSYGFANYWRDGQN RFDFLITLIIVIGETATFVSPDAQTFFSNGEWIRYLLLARMLRLLRLLMYVKSYQAFLATFLTLIPSLMPYLGTIFCILCIYCSLGVQIFGGIVNAGNLN LNATDLADNDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYTELTGNRWTVAYFISFYLITVLLLLNLVVAFVLEAFFAEMELESSEEEDDDSSNTKPR TRYMGTKTRSQRVDVLLHHMLSSELKTADC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10039829 [exp]	0	1
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	3.9	0.8747
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	8.4	0.8335
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	10.2	0.8491
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10022767 [exp]	12.0	0.8313
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	13.5	0.8409
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	17.0	0.8556
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	18.1	0.8512
					Lus10019050 [exp]	23.2	0.8344
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	26.3	0.8202
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	28.5	0.8159

Compare expression of checked genes

Lus10039829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.