Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23120 57 / 1e-10 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70890 55 / 5e-10 MLP43 MLP-like protein 43 (.1) AT1G70880 52 / 1e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70830 51 / 2e-08 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 51 / 4e-08 MLP34 MLP-like protein 34 (.1.2.3) AT1G70840 50 / 6e-08 MLP31 MLP-like protein 31 (.1) AT5G28000 49 / 8e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28010 48 / 2e-07 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70870 47 / 4e-07 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018595 [exp] 296 / 6e-105 AT1G24020 63 / 4e-13 MLP-like protein 423 (.1.2) Lus10008932 [exp] 44 / 2e-05 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G131000 [exp] 218 / 3e-74 AT1G24020 62 / 1e-12 MLP-like protein 423 (.1.2) Potri.001G405600 [exp] 52 / 4e-09 ND / Potri.011G127800 [exp] 52 / 6e-09 ND / Potri.010G111000 [exp] 45 / 2e-06 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.010G000600 [exp] 39 / 0.0004 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10039830 pacid=23165004 polypeptide=Lus10039830 locus=Lus10039830.g ID=Lus10039830.BGIv1.0 annot-version=v1.0 ATGAAGAGCATGAAAGGAGAAGTGGAGTTGGAGATGGAGGCAGAGAGAGCATGGAGGATGTACATAGACAACGACACCATCAGCAAAATCAACCCTCAAA TGCTTTCTCAGGCTAAGTATTTGCAAGGAGATGGCAGCCCTGGTAGCATCAGACTCTTCCAGCTTGGTCCTGCTGTGCAAAACTATGTGAAGGAATCGAC GCAGAAGATCGAAAAAATAGAGACCGGCCGGTCAATAACCTACACAGTCATCGCCGGCGACCTCAGCAACATGTACAATCCTTACAGGGTCACCTTCTCC TTCCTCCCTTTCGAAAACCACAAAAAATGCATCGCTCAATGGCAGGCCGAGTTTGAGCCAATTTCCAAGTCGACCCCTTTGCCGGAGCAAGCCAGAGACA CTGCGCTCGCCTTCCTCAAGTCGTTCGATAAGTTCGAGCGATCGCCTAATTCTGCATAA
AA sequence Show only first row Show all	>Lus10039830 pacid=23165004 polypeptide=Lus10039830 locus=Lus10039830.g ID=Lus10039830.BGIv1.0 annot-version=v1.0 MKSMKGEVELEMEAERAWRMYIDNDTISKINPQMLSQAKYLQGDGSPGSIRLFQLGPAVQNYVKESTQKIEKIETGRSITYTVIAGDLSNMYNPYRVTFS FLPFENHKKCIAQWQAEFEPISKSTPLPEQARDTALAFLKSFDKFERSPNSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	0	1
					Lus10008051 [exp]	5.3	0.9438
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10031046 [exp]	7.5	0.9137
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	7.9	0.9534
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	9.8	0.9486
					Lus10018670 [exp]	10.2	0.9155
AT5G05220			unknown protein		Lus10034248 [exp]	12.0	0.8898
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	12.6	0.9395
AT4G26400			RING/U-box superfamily protein...		Lus10043027 [exp]	12.6	0.9478
AT1G29680			Protein of unknown function (D...		Lus10005415 [exp]	12.7	0.9326
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10027624 [exp]	13.4	0.9266

Compare expression of checked genes

Lus10039830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.