Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53025 334 / 3e-109 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 329 / 2e-106 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 298 / 3e-98 Ubiquitin-conjugating enzyme family protein (.1) AT2G16920 292 / 1e-88 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT2G33770 288 / 3e-88 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT5G41700 61 / 5e-11 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT4G27960 60 / 1e-10 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G14400 60 / 2e-10 ATUBC1, UBC1 UBIQUITIN CONJUGATING ENZYME 1, ubiquitin carrier protein 1 (.1.2) AT1G64230 59 / 2e-10 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 59 / 2e-10 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018596 [exp] 779 / 0 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10028151 [exp] 338 / 6e-111 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10034472 [exp] 294 / 7e-91 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 280 / 5e-89 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1) Lus10025070 [exp] 286 / 1e-86 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10005854 [exp] 283 / 2e-86 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 274 / 9e-86 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10037778 [exp] 244 / 5e-77 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 218 / 2e-67 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130800 [exp] 454 / 2e-156 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 377 / 1e-124 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 377 / 1e-124 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G052600 [exp] 296 / 3e-91 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G043500 [exp] 289 / 3e-88 AT2G33770 823 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.010G146500 [exp] 270 / 1e-86 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.008G104400 [exp] 267 / 2e-85 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.009G136000 [exp] 281 / 3e-84 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.004G176000 [exp] 281 / 4e-84 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.013G108500 [exp] 140 / 1e-37 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10039831 pacid=23165296 polypeptide=Lus10039831 locus=Lus10039831.g ID=Lus10039831.BGIv1.0 annot-version=v1.0 ATGGATCTTGACGTGGCGGATTCCTCCGCTGCTTCAACCCACAAGAAACCCAAGCAAAACGAGGTCTTGGATGGAATTGATGCTGAAATTGAAGTCATAA CCAAAGAGGTTGGTGCTGATACGAAGGGGAAATCGAAAATGGAAGATGATGATTCGTTGGCCAATGGAAATAAGGATGCTTCCGGATCGGTATTAGGCAG TGGCAATCAGGGCAAGAGTGATTTTAGCTATGAGTTGTCCGATCACGATGAGGATCTCTTGGATGACGAGTATTATGCCGACTATATGTCTGATTACGAA ATGGATGATGATGACACCAAGGTGTACGAAGATGAATATGTGAATCTTCAATCTCAATTCGACAATGTGGATCTTCCCACAGGGGTGGAGATATCCATGC CTTGGTTAAAGGAACCGGCTGATACTGTCGAAACCCCTGCAGTTCCCAATGGTCATGCTCAAGATTTTCAAAGTCTGCTATCGTCTAGTGCTAGTGTTTC AGCTAGTAAAGGGGAGCCGAGCTCTAGCAGTAAGGTAGAAGAAGGTGGCATCGAAAAGTTTAAAGATTTCAAACTGTTTGATATGGTGGATGATCATTCG GATCATCACTACAATCGCACGGGCGATCAGGCGGCTCCTGCGAAGAATTGGGCGAAGAGAATCCAGGAGGAATGGAAGATTCTTGAGAACAACTTACCTG AGACGATCTTTGTTAGAGTGTATGAATCAAGGATGGACCTATTGAGATCTGTCATTGTCGGGCCGGCTGGCACTCCTTACCACGATGGCCTTTTCGTCTT CGACTGCCTCTTCCCACCAAACTATCCCGATGCTCCACCACTGGTATACTACTACTCCGGTGGACTCCGATTGAATCCGAATCTGTACGAATGTGGCAAA GTCTGCCTGAGCCTATTGGGAACATGGAGTGGGGATAAAAACGAGAAGTGGATCGCAGGGAAATCTACCATGCTTCAAGTTCTAGTGTCCATACAAGCTC TCATTTTGAATGCACAGCCATACTACAACGAGCCGGGATACGCGAACCAAACTGGACCGGCAGGGCTTAAACACAGCAGAGAGTACAGCGAAAATGCCTT CATTTTGTCTCTGAAGACAATGATGTACACCCTTAGAAGACCTCCAAAGCATTTCGAAATCCTCGTGAAGGGACATTTCCAGCAGGTTGCTCACAACATC CTGATAGCATGCGAAGCTTATGCCGCTGGAAGCGAAGTCGGTCGAATTACGGTTAAAGATGGGGTTGCTGATGTTAGCAATGCAGCGAAGAACGGCTCGC CCGACTTCAAGGGCAAAGTGAAGAAGATGATCGACATTCTTATCAACACCTTTTCCAGATTTGGATTGATAGATTGCGAGCAGTTTCGAACAAGTAATTG A
AA sequence Show only first row Show all	>Lus10039831 pacid=23165296 polypeptide=Lus10039831 locus=Lus10039831.g ID=Lus10039831.BGIv1.0 annot-version=v1.0 MDLDVADSSAASTHKKPKQNEVLDGIDAEIEVITKEVGADTKGKSKMEDDDSLANGNKDASGSVLGSGNQGKSDFSYELSDHDEDLLDDEYYADYMSDYE MDDDDTKVYEDEYVNLQSQFDNVDLPTGVEISMPWLKEPADTVETPAVPNGHAQDFQSLLSSSASVSASKGEPSSSSKVEEGGIEKFKDFKLFDMVDDHS DHHYNRTGDQAAPAKNWAKRIQEEWKILENNLPETIFVRVYESRMDLLRSVIVGPAGTPYHDGLFVFDCLFPPNYPDAPPLVYYYSGGLRLNPNLYECGK VCLSLLGTWSGDKNEKWIAGKSTMLQVLVSIQALILNAQPYYNEPGYANQTGPAGLKHSREYSENAFILSLKTMMYTLRRPPKHFEILVKGHFQQVAHNI LIACEAYAAGSEVGRITVKDGVADVSNAAKNGSPDFKGKVKKMIDILINTFSRFGLIDCEQFRTSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	0	1
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	4.9	0.8846
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	10.1	0.8705
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	12.4	0.8247
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10030935 [exp]	12.7	0.8517
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	15.9	0.8752
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10021161 [exp]	19.7	0.8289
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	26.2	0.8483
AT4G16144		AMSH3	associated molecule with the S...		Lus10036454 [exp]	26.8	0.8425
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	27.7	0.8391
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	33.2	0.8418

Compare expression of checked genes

Lus10039831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.