Plant FIBer expression Database

Lus10039832 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28310 131 / 2e-38 unknown protein
AT1G52270 65 / 1e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018597
[exp]
252 / 4e-86 AT4G28310 154 / 2e-47 unknown protein
Lus10033688
[exp]
172 / 2e-54 AT4G28310 156 / 3e-48 unknown protein
Lus10031649
[exp]
161 / 4e-50 AT4G28310 149 / 2e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130700
[exp]
140 / 1e-41 AT4G28310 120 / 9e-34 unknown protein
PFAM info
Representative CDS sequence
>Lus10039832 pacid=23165254 polypeptide=Lus10039832 locus=Lus10039832.g ID=Lus10039832.BGIv1.0 annot-version=v1.0
ATGGTGGTAACTCTGGGTCCTGGAAAGTTCTACGGCAGCAGCCTCCCTCGCCCACGCTTCTTCGACAATATAACCTTCAACTCGGAGCGGGTCGATCCAC
CGCTCTCCGTCATGGATCCTCTTCTCTCCTGGGCTCGTGAGGCTCACTGGTCCATGGGAGGTCTCAGCACTGACCGCCTCCGCCTCCAGGGCCGGATCGA
AGGGAATGTCGATCGGCTTCGCAAGTCCAGAGAAAAGCAGACCAGAGCTACTCCACTTAAGCGGAAGAATTGGGTCACGAAAGGCGATGAACAAAGGGAT
GATGGCTCTGTTTCTCCTCCTCCGGTGCCTAGAGTGACGAAAAAAAGGAAGTTCATCGATCTGTTCGAAGGAGAAGAAGAAAGGAAATGTCCGGCGAGGA
AATTGGTCGATGAGTTTGAGAAGGTTGAGGAATTGGAATCCGAATCGGTTCGAAGGAGAGCGAGGAGCAACAATCGGATCGGTGATCCAGTGATGAAAAA
CAAGTTGAAGAAGCGATTGAGGAAAGTTGGAGAAGATGAAATTAGGAGTTCGCCTAGGTTTGCTAAGGAGAATTCAGCTGAGATTTGA
AA sequence
>Lus10039832 pacid=23165254 polypeptide=Lus10039832 locus=Lus10039832.g ID=Lus10039832.BGIv1.0 annot-version=v1.0
MVVTLGPGKFYGSSLPRPRFFDNITFNSERVDPPLSVMDPLLSWAREAHWSMGGLSTDRLRLQGRIEGNVDRLRKSREKQTRATPLKRKNWVTKGDEQRD
DGSVSPPPVPRVTKKRKFIDLFEGEEERKCPARKLVDEFEKVEELESESVRRRARSNNRIGDPVMKNKLKKRLRKVGEDEIRSSPRFAKENSAEI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G28310 unknown protein Lus10039832
[exp]
0 1
AT4G28310 unknown protein Lus10031649
[exp]
1.4 0.9219
AT3G18630 ATUNG uracil dna glycosylase (.1) Lus10030553
[exp]
10.2 0.8637
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10026954
[exp]
14.5 0.8879
AT1G80710 DRS1 DROUGHT SENSITIVE 1 (.1) Lus10036319
[exp]
21.6 0.8826
AT1G44900 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, ... Lus10009683
[exp]
28.9 0.8731
AT4G28310 unknown protein Lus10018597
[exp]
33.2 0.8480
AT2G40550 ETG1 E2F target gene 1 (.1) Lus10012889
[exp]
34.6 0.8615
AT5G52910 ATIM timeless family protein (.1) Lus10038831
[exp]
37.6 0.8623
AT5G42330 unknown protein Lus10012265
[exp]
38.3 0.8114
AT5G54970 unknown protein Lus10043108
[exp]
39.8 0.8483

Lus10039832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.