Plant FIBer expression Database

Lus10039834 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03600 153 / 6e-48 unknown protein
AT1G03730 151 / 6e-47 unknown protein
AT4G28330 115 / 3e-33 unknown protein
AT4G28340 112 / 8e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018599
[exp]
204 / 9e-68 AT4G03600 200 / 2e-66 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130300
[exp]
173 / 1e-55 AT1G03730 179 / 3e-58 unknown protein
PFAM info
Representative CDS sequence
>Lus10039834 pacid=23165118 polypeptide=Lus10039834 locus=Lus10039834.g ID=Lus10039834.BGIv1.0 annot-version=v1.0
ATGGACCAAGACGATGAACCAGAGCCACTGAGTCCATCCCCATCCCCATCTCAAGCTCAGCCGCCGTCAACGACGTACAGCTTACTACTCCGAATCATGA
GCAAGCGACGGACCTGGGTCTTCCTCTTCGTTCTCGTCTACTCGATCCTCCTCTCTTCCTCATGGAACCTCCTCAAATCCATCCTCTCATGGTACTACAA
CCAGCTACAACATCAATCGGCCTCATCGGCGTCGTCGGGATGGCCGGCGGTGTACGCGTCGGTGCTTTTAGGGGCGGTGTTCGGAGTTTTGGCGATGGCG
ACGGCGCTGGCCGTGGCGGTGCCGGCGACGGTGGTGATATGGATAACGGTGGTGGTGCTGCTGGCGTTCTTCGGGAAACCGAGGAAGGTTCTGGTGGTGG
AAGGGAGGAAGATTACTCGAGAGATTTTGGGGTTCGTGGTGAAGATTCTGTTGAAGGAAGGGAATGCGGTGGCGGCGATTTGTGCAGTTTTGGGGTACTT
TGTTCTTGTGCGGCGGCGGAGTGGTGACGTGGACTGA
AA sequence
>Lus10039834 pacid=23165118 polypeptide=Lus10039834 locus=Lus10039834.g ID=Lus10039834.BGIv1.0 annot-version=v1.0
MDQDDEPEPLSPSPSPSQAQPPSTTYSLLLRIMSKRRTWVFLFVLVYSILLSSSWNLLKSILSWYYNQLQHQSASSASSGWPAVYASVLLGAVFGVLAMA
TALAVAVPATVVIWITVVVLLAFFGKPRKVLVVEGRKITREILGFVVKILLKEGNAVAAICAVLGYFVLVRRRSGDVD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G03600 unknown protein Lus10039834
[exp]
0 1
AT4G03600 unknown protein Lus10018599
[exp]
1.0 0.9411
AT1G55805 BolA-like family protein (.1) Lus10002318
[exp]
2.8 0.8658
AT1G61667 Protein of unknown function, D... Lus10020075
[exp]
3.9 0.8726
AT2G24580 FAD-dependent oxidoreductase f... Lus10026231
[exp]
3.9 0.8500
AT2G37920 EMB1513 embryo defective 1513, copper ... Lus10024339
[exp]
5.3 0.8928
AT5G03680 Trihelix PTL PETAL LOSS, Duplicated homeodo... Lus10027718
[exp]
5.8 0.8493
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Lus10020873
[exp]
6.2 0.8479
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10020729
[exp]
10.6 0.8696
AT1G66130 NAD(P)-binding Rossmann-fold s... Lus10039898
[exp]
11.2 0.8660
AT3G58840 PMD1 peroxisomal and mitochondrial ... Lus10007347
[exp]
12.0 0.8548

Lus10039834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.