Plant FIBer expression Database

Lus10039835 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G53035 169 / 1e-54 unknown protein
AT3G15358 164 / 7e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018600
[exp]
268 / 9e-94 AT1G53035 166 / 1e-53 unknown protein
Lus10015439
[exp]
177 / 9e-58 AT3G15358 190 / 3e-63 unknown protein
Lus10011176
[exp]
177 / 1e-57 AT3G15358 191 / 1e-63 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G130100
[exp]
208 / 3e-70 AT1G53035 169 / 9e-55 unknown protein
Potri.001G399900
[exp]
188 / 2e-62 AT1G53035 182 / 6e-60 unknown protein
Potri.011G119200
[exp]
177 / 6e-58 AT1G53035 172 / 4e-56 unknown protein
Potri.004G044000
[exp]
175 / 4e-57 AT1G53035 182 / 4e-60 unknown protein
Potri.011G052900
[exp]
171 / 2e-55 AT3G15358 159 / 7e-51 unknown protein
PFAM info
Representative CDS sequence
>Lus10039835 pacid=23165154 polypeptide=Lus10039835 locus=Lus10039835.g ID=Lus10039835.BGIv1.0 annot-version=v1.0
ATGCCTTCTTCTTCTTCATCATCATCAATGTTCTTCACGATCTGCATTCTGCACGCGACGATCGCTGTCACGTGCGGAATCTCGATCATGTTCTGCCTCG
AGGAGATCAGCTCCCTGGGCCACGGAACCAAAACGGCCGAGAAGTTGTTACTCGGTTCGACCCCGCACGACCGGTTGCTAATCGAGACTTCGTGCTCGTT
CGCGGGGTTGCTACTCTGTATGGTCGGGTCTCTGGTTTTCATGGTCGGGTTCGTGAAGGACCGAGAGTTTCAGAGCTTTTTCGCGAAGGGTTGCGTGGTG
CTTCATGTGGCGATGGCGGTTTGGAGAGTGTGGTTCGAACGGAGGGTCGAGGATCTGGCTCGGGACTGGCCGAAGCAGGTTGCGGGGGATGTTTTGTTGG
GGAGTTCTTGGGGGTTCTTCTTGGTTTACAACTGGAGGGAAATGTATGACTAG
AA sequence
>Lus10039835 pacid=23165154 polypeptide=Lus10039835 locus=Lus10039835.g ID=Lus10039835.BGIv1.0 annot-version=v1.0
MPSSSSSSSMFFTICILHATIAVTCGISIMFCLEEISSLGHGTKTAEKLLLGSTPHDRLLIETSCSFAGLLLCMVGSLVFMVGFVKDREFQSFFAKGCVV
LHVAMAVWRVWFERRVEDLARDWPKQVAGDVLLGSSWGFFLVYNWREMYD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53035 unknown protein Lus10039835
[exp]
0 1
AT1G01900 SBTI1.1, ATSBT1... subtilase family protein (.1) Lus10003663
[exp]
3.9 0.7775
AT3G52240 unknown protein Lus10034158
[exp]
14.8 0.7410
Lus10025700
[exp]
18.6 0.7351
AT2G47470 ATPDI11, ATPDIL... UNFERTILIZED EMBRYO SAC 5, MAT... Lus10020691
[exp]
22.3 0.7354
Lus10009357
[exp]
26.2 0.7097
Lus10030338
[exp]
26.8 0.6424
Lus10034961
[exp]
28.3 0.7189
AT4G04980 unknown protein Lus10018473
[exp]
29.3 0.6912
AT3G55390 Uncharacterised protein family... Lus10001709
[exp]
31.6 0.7233
AT1G62300 WRKY ATWRKY6, WRKY6 WRKY family transcription fact... Lus10022959
[exp]
33.2 0.6672

Lus10039835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.