Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 597 / 0 Protein kinase superfamily protein (.1) AT5G44290 577 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G03740 572 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 540 / 0 Protein kinase superfamily protein (.1) AT1G54610 520 / 2e-179 Protein kinase superfamily protein (.1.2.3) AT1G71530 523 / 3e-179 Protein kinase superfamily protein (.1.2) AT1G74330 514 / 4e-175 Protein kinase superfamily protein (.1.2) AT1G09600 505 / 2e-171 Protein kinase superfamily protein (.1) AT5G50860 499 / 5e-171 Protein kinase superfamily protein (.1) AT1G57700 496 / 2e-168 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018601 [exp] 1131 / 0 AT1G53050 651 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 892 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 868 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 597 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 570 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 545 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012805 [exp] 541 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 540 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 528 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G130000 [exp] 775 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 632 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 631 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 546 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 540 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 537 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 521 / 1e-179 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 525 / 2e-179 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 521 / 2e-178 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G103900 [exp] 518 / 4e-178 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039836 pacid=23165243 polypeptide=Lus10039836 locus=Lus10039836.g ID=Lus10039836.BGIv1.0 annot-version=v1.0 ATGGGGTGTATTTCTTCCAAAGGAGGGAGCCCTAGGGAGAGGCAATCAGCCTCACGTAGGGTTGCTCATGTGAATACTATTAGGGATGAAGGGATTCGGT CAAGTGGTGGTGAAGTTAAAGTTACGTTGATTGAGAGGAAGACGACGAGTCGTCATGGTTCGATTAGGCCTCACAGTGATCAGATGGTGTTGAGATCATC ATCAAGGGAGTATCAGACTGAGAAGAGACGTGATTCTGCTAGTGTTGTTGCTACTGCTTATTCGAGAAGTGAGAGGAGGTCTGATATAACTGATTTCAGT GATCCAGCTTGGGGGAAGGTTCCTAAGAATTTGGAAGCTGAGCAGGTTGCTGCTGGTTGGCCTGCTTGGCTCGTCTCAGTGGCTGGCGAATCGATCAAGG GATGGATTCCGAGGAAAGCTAGCTCGTTTGAGAAGCTCGATAGAATTGGCCAAGGAACGTATAGCAGTGTATACAAAGCTCGTGACATTACTCGCGATAA GATTGTCGCTCTGAAGAAAGTTCGATTTGATAATAACGATGCGGATAGTATCAAGTTCATGGCGCGTGAGATACTTATTTTGCGCAAGCTGGATCATCCG AATGTTATAAAGCTAGAAGGATTAATAACTTCACCAACTTCGTCCACTTTGTACCTTATATTTGAATACATGGAGCATGATTTAACAGGGCTTGCTTCAA TACCAGGGCTCAAGTTCACTGAATCTCAGATCAAGTGTTACATGAAGCAACTTTTAAGTGGACTCGATCATTGTCACAGTCGCGGGGTTTTTCACCGTGA CATCAAGGGCTCGAACCTTCTAATTGACAACAATGGCGTTCTGAAAATTGCTGATTTTGGCCTGGCGAGCTTCTTTGATCCGAAAAGTAGTGCACCACTT ACCAGTCGTGTAGTGACTCTTTGGTATAGAGCGCCTGAACTCTTACTTGGGGCGTGTAGATATGGAGTTGCTGTGGATTTGTGGAGCAGTGGCTGCATAC TTGGTGAACTATATTCCGGAAAGCCCATCTTACCTGGACGAACAGAGGTTGAGCAACTGCACAAAATCTTCAAGCTATGTGGCTCACCGTCCGAGGATTA CTGGTTAAAAACAAAACTACATCGTTCTTCCGTGATAAAGCCTCAAAGACCGTACAAAAGATGCGTAGAAGAAACGTTCAAGGACTTCCCTGCTCCTGCC CTCGAGCTTTTGGAGACCTTACTATCGATGGATCCCAGTCAGAGAGGGAATGCTGCTTTAGTTCTTGAGAGTGAGTACTTCACCACAAGACCGTTTGCTT GCGATCCTTCAAGTTTGCCCAAGTATCCTCCAAGCAAAGAAATTGATGCTAAAAAGCGAGATGAAGAAGCTCGAAGGCAAAAGCAAGCTGCTGCAGCCAT GGGGGATGGACAAAATGAATCTGTGCCCATCAAGGGACCTACCGTTTTAGCCTACGGATCCACCACACAGGCTAGTCAACATTCCTATTCGACCAAGGAC AATAAAAACTACTCGGGCCTCCTGGTTCAACCTTCTAAGCAAATCCAAGCTGCAATGGAGGGAAGAAAGAGCTACATGGACAACCACCAACGTAGAAAAG TCACGCATTCAGGGCCACTGGTCAATGGTTCCGGCTGGACCAAGTCCGGTCGAGATAACAATAATCTGACAACCTCTGGGATGGTAGCAGCACGGATTTC GTTGCCTCAAGATCATCAGGCCAAACCTAGAGTGGTGGACAAGGGACCGGATTCTTCGAAGGGTAACAAGATCTATGTGTCGGGTCCGCTCCTAGTTCCG TCCAACCACGTGGATCAAATGCTGAAAGACCACAATCGGAAGATACAAGAATTCGCCCGGAGGCGGAAATAG
AA sequence Show only first row Show all	>Lus10039836 pacid=23165243 polypeptide=Lus10039836 locus=Lus10039836.g ID=Lus10039836.BGIv1.0 annot-version=v1.0 MGCISSKGGSPRERQSASRRVAHVNTIRDEGIRSSGGEVKVTLIERKTTSRHGSIRPHSDQMVLRSSSREYQTEKRRDSASVVATAYSRSERRSDITDFS DPAWGKVPKNLEAEQVAAGWPAWLVSVAGESIKGWIPRKASSFEKLDRIGQGTYSSVYKARDITRDKIVALKKVRFDNNDADSIKFMAREILILRKLDHP NVIKLEGLITSPTSSTLYLIFEYMEHDLTGLASIPGLKFTESQIKCYMKQLLSGLDHCHSRGVFHRDIKGSNLLIDNNGVLKIADFGLASFFDPKSSAPL TSRVVTLWYRAPELLLGACRYGVAVDLWSSGCILGELYSGKPILPGRTEVEQLHKIFKLCGSPSEDYWLKTKLHRSSVIKPQRPYKRCVEETFKDFPAPA LELLETLLSMDPSQRGNAALVLESEYFTTRPFACDPSSLPKYPPSKEIDAKKRDEEARRQKQAAAAMGDGQNESVPIKGPTVLAYGSTTQASQHSYSTKD NKNYSGLLVQPSKQIQAAMEGRKSYMDNHQRRKVTHSGPLVNGSGWTKSGRDNNNLTTSGMVAARISLPQDHQAKPRVVDKGPDSSKGNKIYVSGPLLVP SNHVDQMLKDHNRKIQEFARRRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	1.7	0.8399
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	3.9	0.8264
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10033387 [exp]	4.0	0.8275
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	6.0	0.7874
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	6.3	0.7871
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	6.5	0.8260
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	7.5	0.7924
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	8.9	0.8302
AT3G61710		AtBECLIN1, ATAT...	BECLIN1, AUTOPHAGY 6 (.1.2.3)		Lus10012631 [exp]	9.8	0.7727
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	14.3	0.7255

Compare expression of checked genes

Lus10039836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.