Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 54 / 7e-10 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60280 50 / 1e-08 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45410 45 / 9e-07 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45430 44 / 1e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45330 44 / 2e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 43 / 4e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT1G15530 40 / 4e-05 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 40 / 5e-05 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 39 / 8e-05 RLK receptor lectin kinase (.1) AT1G70130 39 / 0.0001 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018602 [exp] 118 / 2e-32 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10025441 [exp] 65 / 8e-14 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10015313 [exp] 62 / 1e-12 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014037 [exp] 49 / 4e-08 AT1G15530 807 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10019879 [exp] 48 / 7e-08 AT1G15530 621 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 47 / 2e-07 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004709 [exp] 43 / 4e-06 AT3G55550 257 / 1e-80 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 41 / 3e-05 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 40 / 4e-05 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053100 [exp] 66 / 3e-14 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G044200 [exp] 66 / 5e-14 AT4G04960 756 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053200 [exp] 62 / 1e-12 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G196600 [exp] 49 / 3e-08 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 40 / 5e-05 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 40 / 5e-05 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.009G036100 [exp] 39 / 9e-05 AT3G53810 617 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 39 / 0.0001 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.009G036300 [exp] 39 / 0.0001 AT3G53810 630 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G058400 [exp] 39 / 0.0001 AT3G55550 714 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10039837 pacid=23165379 polypeptide=Lus10039837 locus=Lus10039837.g ID=Lus10039837.BGIv1.0 annot-version=v1.0 ATGTTCGTTGGGTTTGCCCCTGCCACAGGGCAATTGGTTGAGAGTCATCACATTTTGGGTTGGAGCTTTAGCAATGACAATGCCTCAATTGGTGATGCCT TGGTCACTACAAACTTGCCTTCTTTCGTCCGTCCAGACGAGGAATCGCTTCTCGAATCAAAAGGGTTCGTAGCCGGGATCATTGTTGGTGGATTGAGGAT CTTGAAAGATGCAGAAAGCGGGATCTTGTATCTGCATAAAGAGCTGTGA
AA sequence Show only first row Show all	>Lus10039837 pacid=23165379 polypeptide=Lus10039837 locus=Lus10039837.g ID=Lus10039837.BGIv1.0 annot-version=v1.0 MFVGFAPATGQLVESHHILGWSFSNDNASIGDALVTTNLPSFVRPDEESLLESKGFVAGIIVGGLRILKDAESGILYLHKEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	0	1
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	2.6	1.0000
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	3.2	1.0000
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	3.9	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	4.5	1.0000
					Lus10017294 [exp]	5.0	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	6.9	1.0000
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	7.1	0.9572
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	7.4	0.9213
					Lus10003941 [exp]	7.5	1.0000
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10039837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.