Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 233 / 2e-75 Protein of unknown function (DUF506) (.1) AT2G20670 214 / 3e-68 Protein of unknown function (DUF506) (.1) AT3G07350 113 / 4e-29 Protein of unknown function (DUF506) (.1) AT4G14620 110 / 6e-28 Protein of unknown function (DUF506) (.1) AT3G22970 104 / 3e-26 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 101 / 1e-24 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT3G25240 98 / 1e-23 Protein of unknown function (DUF506) (.1) AT2G39650 96 / 1e-22 Protein of unknown function (DUF506) (.1) AT3G54550 95 / 2e-22 Protein of unknown function (DUF506) (.1) AT1G12030 88 / 5e-20 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017723 [exp] 312 / 2e-106 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 311 / 8e-106 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10011174 [exp] 244 / 3e-79 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 233 / 3e-75 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10018603 [exp] 159 / 6e-48 AT4G32480 106 / 5e-28 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 139 / 4e-39 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 137 / 3e-38 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10003087 [exp] 107 / 2e-26 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 105 / 1e-25 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G129900 [exp] 282 / 9e-95 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 265 / 4e-88 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.004G044300 [exp] 250 / 6e-82 AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) Potri.011G053300 [exp] 234 / 1e-75 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 146 / 4e-42 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 139 / 3e-39 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 112 / 3e-29 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G184700 [exp] 111 / 2e-28 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 109 / 2e-28 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.005G058200 [exp] 106 / 6e-27 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10039838 pacid=23165074 polypeptide=Lus10039838 locus=Lus10039838.g ID=Lus10039838.BGIv1.0 annot-version=v1.0 ATGGCGCTTTACAGATGGAGCTCCGACAGATTCTCCGACGACTCAGCCAGCTTCTCCGACATCATTTTCGGCTTCTCCAGCGAACCCAGCGACGAAAATT CCTCCTCCAACAGCTCATGTACCAGCAGCTCCGGCGGCGGGGGTGGTGGTTTCCCTGACGACGACACGGCGGAGGAGAACAACTCCGGCAATTCCGAGGA GCGGAAGAAGTTCTGGGATTCCCAGAACGAACTCCTTCAGGCGACATTGTACAGAACTTCTTCTCTGGAATCGAAGATTCGACAGTCGACGAAAGATTCC CTCACCGAGATCGAGAATGTCGGACTGAGTTGCGTGTGCGGAAAGTCCGACGCCTCCGGCTGCCGGAATTGCCTCCGGAGGGAAGTCTCCGTCAGGCTGA GGAGCAGAGGCTATAATTGCTCAATCTGCAAGTCTAAATGGAACGGAGGGCGAAACGGTCTTTTAGCTGGGGAACATTGGTATTTGGAAGTGGTGGAGGA ATCGAGGAAATCAGGGGAAGTGAAGGTGATAATCGAATTGAATTTTCGGGCGGAGTTCGAGATGGCGAAGGCGAGCGAGGAGTATAACCGGTTGGTTTCG CGGCTGCCGGAGGTGTTCGTCGGCAGGGTGGACAGGATGAAGTCTCTGATCAAGATACTCTGTTCGGCAGCGAAGACGTGTATGAAGGAGAAGAAGATCC ACTTGGCGCCGTGGAGGAAGCACAAGTATATGCAGTCGAAGTGGCTCGGTGGCGGAACGGTGGAGAGGTTGGTACCGGAGGCGGAGGCGGAGGCGGCGGC GCTGACTGCGGGGTACTCTCATAGGCCGGTGAAGGCGAAGGCGTCGATGTTGACTTATGACTTGACGGAGAGTCAGAGTCGACGGTTGGCGCCATCAGTT GTGTGTTTTCCCGCTGTAAGAGTTGTGTGA
AA sequence Show only first row Show all	>Lus10039838 pacid=23165074 polypeptide=Lus10039838 locus=Lus10039838.g ID=Lus10039838.BGIv1.0 annot-version=v1.0 MALYRWSSDRFSDDSASFSDIIFGFSSEPSDENSSSNSSCTSSSGGGGGGFPDDDTAEENNSGNSEERKKFWDSQNELLQATLYRTSSLESKIRQSTKDS LTEIENVGLSCVCGKSDASGCRNCLRREVSVRLRSRGYNCSICKSKWNGGRNGLLAGEHWYLEVVEESRKSGEVKVIIELNFRAEFEMAKASEEYNRLVS RLPEVFVGRVDRMKSLIKILCSAAKTCMKEKKIHLAPWRKHKYMQSKWLGGGTVERLVPEAEAEAAALTAGYSHRPVKAKASMLTYDLTESQSRRLAPSV VCFPAVRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32480			Protein of unknown function (D...		Lus10039838 [exp]	0	1
					Lus10018095 [exp]	5.5	0.9087
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	6.6	0.9101
					Lus10013815 [exp]	11.7	0.8609
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	12.8	0.9073
AT4G10925			Nuclear transport factor 2 (NT...		Lus10003192 [exp]	17.7	0.8056
AT3G57450			unknown protein		Lus10029496 [exp]	19.3	0.9018
AT4G34180			Cyclase family protein (.1)		Lus10001509 [exp]	20.1	0.8946
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	20.8	0.8859
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	27.7	0.8870
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	27.8	0.8921

Compare expression of checked genes

Lus10039838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.