Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 294 / 1e-95 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 265 / 2e-84 Eukaryotic aspartyl protease family protein (.1) AT2G35615 258 / 1e-81 Eukaryotic aspartyl protease family protein (.1) AT1G31450 254 / 5e-80 Eukaryotic aspartyl protease family protein (.1) AT2G28010 161 / 4e-45 Eukaryotic aspartyl protease family protein (.1) AT2G28030 157 / 1e-43 Eukaryotic aspartyl protease family protein (.1) AT2G28040 156 / 4e-43 Eukaryotic aspartyl protease family protein (.1) AT2G03200 156 / 1e-42 Eukaryotic aspartyl protease family protein (.1) AT1G01300 147 / 5e-39 Eukaryotic aspartyl protease family protein (.1) AT2G28220 147 / 4e-38 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029913 [exp] 566 / 0 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 506 / 1e-178 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 495 / 2e-174 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039792 [exp] 458 / 3e-160 AT5G33340 228 / 2e-70 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 373 / 4e-126 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 348 / 2e-116 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 344 / 4e-115 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 344 / 7e-115 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 340 / 3e-113 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 309 / 2e-101 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 270 / 2e-86 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 255 / 2e-80 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 162 / 5e-45 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 153 / 2e-41 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 150 / 1e-40 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 149 / 7e-40 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 148 / 1e-39 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 145 / 2e-38 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 134 / 2e-34 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10039839 pacid=23165122 polypeptide=Lus10039839 locus=Lus10039839.g ID=Lus10039839.BGIv1.0 annot-version=v1.0 ATGGTTGTTGCTCCCATTATTCAATCATCACTACTCATAGTAGCAACACTGTGTTGCTTCATAGCCAACTCCGAAGGTGAAGAATTTAGCGTCAACTTAA TCCACCGTGATTCCCCTATTTCCCCCCTTTACGACCTACATGAAACTCGATATCAACGACTCAAAAAAGCTCTCAACCGATCGATCAACCGCATCAACCA TCTCACTTCAGCCAACAGTACTCGCCTTTCTGTCAATTCCAAATTGATCACAGACATTAACGGCGGATACCTGATGAACATCTCCATCGGCACTCCCCCG TTCCAAATCATGGCATTGGCGGACACGGGAAGCGACGTCATATGGACAAAGTGTAGTGCTTACCCTAACAAAGGTATCCTCTTCACCCCGACATTATCAA ATACTTATAGAACATTGCCGTGTCCATCAAAAGCTTGCGACTATCTTGATAATTTGGAAGGAGTAGGCTTTTGCTCCCCTAACAATGACCACGTTTGTCA TTACAAAATTACATACGGTGACAAGTCTCACACACTTGGCGACTTTGCGTTCGAGACTTTGAATTTGGAGTCAACGTCTGCTCCAGGGCGCACTGTGCCG TTTCAAAATACTCTCATTGGGTGTAGCTACGACACAAAATTAACTTTCGCATCAAAGGGTCTCGGCATCATTGGGCTTGGACGCGGGCGTGCTTCACTCA TCACCCAACTCGGCCCCTCCATTGATTGGAGATTCTCATACTGCCTGCCTCATTCAGACGGACCACCAAGTACAATTAACTTCGGGCGGGATGTCACAGG TCCCGGCGCCGTTTCAACTCCCTTGATATATGACCCGTCACACCCATCCCTCTTCTTCCTTCGGTTGGAAGCGATGAGTGTGGGAAATGTTAGAATACCA TTTCAAGGCTCCACTAGTGAAGATCAGAATATTGTCATCGACTCTGGTACGGAATATGCGGTTCTCCCCACCAAATTTTTATCCCAACTATCGTATGAGG TGGCAAGACAGGTCGTTGGCATGAAGAGAGTGGCGAGCCCATTCAAGACATTCTTCAACCTCTGTTATGAGGTGGGTCCCACCACAGCTGGACCCATCAA TGCTCCTCCCATCACGATGAATTTTCTTAATGCTGATGTAAAGCTACCTCTATCCAATATTTTCGCCTCAGTCAGTGATACAGTAATGTGTTTCGCTTTT CTCCCAACTGACGTCATCCCAGTTTACGGCTGTTTGACGCAAGAAAATTTCCTCGTTGGGCATGATCTTCGAAAGAACATTTTGTCTTTTAAGCCAGCCA ATTGTGGTCATGAGTAA
AA sequence Show only first row Show all	>Lus10039839 pacid=23165122 polypeptide=Lus10039839 locus=Lus10039839.g ID=Lus10039839.BGIv1.0 annot-version=v1.0 MVVAPIIQSSLLIVATLCCFIANSEGEEFSVNLIHRDSPISPLYDLHETRYQRLKKALNRSINRINHLTSANSTRLSVNSKLITDINGGYLMNISIGTPP FQIMALADTGSDVIWTKCSAYPNKGILFTPTLSNTYRTLPCPSKACDYLDNLEGVGFCSPNNDHVCHYKITYGDKSHTLGDFAFETLNLESTSAPGRTVP FQNTLIGCSYDTKLTFASKGLGIIGLGRGRASLITQLGPSIDWRFSYCLPHSDGPPSTINFGRDVTGPGAVSTPLIYDPSHPSLFFLRLEAMSVGNVRIP FQGSTSEDQNIVIDSGTEYAVLPTKFLSQLSYEVARQVVGMKRVASPFKTFFNLCYEVGPTTAGPINAPPITMNFLNADVKLPLSNIFASVSDTVMCFAF LPTDVIPVYGCLTQENFLVGHDLRKNILSFKPANCGHE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039839 [exp]	0	1
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029953 [exp]	1.0	1.0000
					Lus10026868 [exp]	4.7	0.9509
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10026737 [exp]	5.5	0.7940
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	8.7	0.8160
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	10.0	0.8160
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	11.2	0.8160
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	12.2	0.8160
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	13.2	0.8160
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	14.1	0.8160
					Lus10033149 [exp]	15.0	0.8160

Compare expression of checked genes

Lus10039839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.