Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45030 1276 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G45332 1266 / 0 Translation elongation factor EFG/EF2 protein (.1) AT1G62750 550 / 0 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) AT3G12915 127 / 3e-30 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G13650 127 / 4e-30 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 118 / 2e-27 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G06220 118 / 3e-27 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G08650 110 / 1e-24 Small GTP-binding protein (.1) AT5G25230 109 / 3e-24 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 107 / 4e-24 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018604 [exp] 1443 / 0 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10004326 [exp] 553 / 0 AT1G62750 1332 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10028909 [exp] 550 / 0 AT1G62750 1334 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Lus10007535 [exp] 132 / 7e-32 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10034111 [exp] 118 / 4e-27 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10015364 [exp] 107 / 8e-24 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10035968 [exp] 103 / 2e-22 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10039896 [exp] 101 / 4e-22 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10007250 [exp] 101 / 5e-22 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123600 [exp] 1276 / 0 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G109900 [exp] 1269 / 0 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.003G113500 [exp] 555 / 0 AT1G62750 1310 / 0.0 SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1) Potri.006G053000 [exp] 127 / 2e-30 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 125 / 1e-29 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.017G079800 [exp] 106 / 1e-23 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.001G305300 [exp] 103 / 2e-22 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.006G190600 [exp] 103 / 2e-22 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.005G098100 [exp] 92 / 5e-19 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 90 / 3e-18 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0329 [flax] [poplar] S5 PF03764 [flax] [poplar] EFG_IV Elongation factor G, domain IV CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10039840 pacid=23165010 polypeptide=Lus10039840 locus=Lus10039840.g ID=Lus10039840.BGIv1.0 annot-version=v1.0 ATGGCCAGGTTCCCTCGCGGATCCGCCTCTCCATCACTCCTCTACTCCTTCTTCACCTCCGCCGCCAACTCCACACGCTCCTCTCCCAGCTCCCCGGCTT CCACCTTGCTCCATGGCAACTTCCACCTCCGCCAATTCTCCTCCAGCTCTGCCGCCCGCGCCAAGGAAGATAATAAAGATCCGAAGTGGAAGGAGTCCAT GGGACGCATCCGCAACATCGGAATCTCAGCTCACATCGACTCCGGCAAGACCACGCTCACCGAGAGGGTCCTCTTCTACACCGGCCGGATCCACGAGATC CACGAGGTCCGCGGCCGCGACGGCGTCGGAGCTAAGATGGACTCCATGGACTTGGAGAGGGAGAAAGGGATCACTATTCAGTCAGCTGCCACTTACTGTA CTTGGAACGATTACCAGGTCAACATAATTGATACGCCAGGCCACGTTGACTTCACCATTGAAGTGGAGAGAGCTCTACGAGTGCTGGATGGTGCTATTCT TGTGCTATGCAGCGTTGGAGGAGTACAAAGTCAGTCGATAACTGTGGATAGGCAAATGAGGAGATATGAAGTTCCTCGTGTCGCTTTTATCAACAAGCTC GATCGGATGGGAGCGGATCCTTGGAAAGTTCTGAACCAGGCAAGGTCTAAACTGAGGCATCACAGTGCAGCAGTTCAGGTCCCAATTGGGTTAGAGGAGG ATTTGAAGGGTCTTGTTGACCTAGTGCAAATGAAAGCTTTGTACTTTCATGGTTCCAGTGGTGAAAATATTGTCACTGAAGATATTCCTGCTGATATGGC AGCAGTTGTTGGAGGGGAAAGGAGTGGACTGTACAATAAATACCTGTATTTGGAAGCAATACGCAGAGCTACTATAGCTAGGAAATTCATACCAGTTTTC ATGGGCAGTGCGTTCAAAAATAAGGGAGTACAACCTCTTCTCAACGGCGTTCTTAGTTATTTGCCATGTCCAATTGAAGTGAGCAATTATGCTCTGGATC AAACAAAGGATGAAGAGAAGGTTTTGTTGACAGGTAACCCTGAGGGACCTCTGGTTGCATTAGCTTTCAAATTGGAGGAAGGGCGTTTTGGCCAGTTGAC ATATCTCAGAATCTATGAGGGTGTCATTCGCAAGGGGGACTTTATCATCAACGTAAACACAGGCAAGAGGATCAAGGTTCCTCGTTTAGTCCGAATGCAT TCTGATGAAATGGAGGATATTCCAGAAGCACATGCTGGCCAGATAGTTGCTGTGTTCGGAATGGATTGTGCTTCTGGTGATACTTTCACCGATGGATCCG TCAAATACACCATGACATCTATGAACGTACCGGAGCCTGTCATGTCCTTGGCTGTTCAACCAGTTTCAAAAGATTCCGGGGGACAGTTTTCAAAGGCTCT GAACCGATTCACGAGAGAAGACCCTACTTTCCGTGTCGGATTGGATCCCGAGAGTGGTCAGACTATTATTTCTGGAATGGGAGAGTTACATTTGGACATT TATGTTGAACGAATCCGGAGAGAATATAAGGTTGATGCAACTGTTGGGAAACCTCGTGTAAACTTCAGGGAAACTATTACTCAACGTGCAGAATTCGATT ATTTACACAAGAAGCAAAGTGGAGGGCAAGGTCAATACGGTCGAGTAATCGGGTTTGTGGAGCCACTTCCTATAGGTTCTGCAACCAAGTTTGAGTTCGA GAACATGATAGTGGGACAAGCCATACCATCAAATTTCATCCCTCCAATTGAGAAAGGGTTTAGAGAAGCTGCTAACTCTGGCTCCTTGATCGGGTTCCCA GTCGAAAACCTCCGCATCGTCTTAACCGATGGTGCTTCTCATGCCGTCGATTCCAGCGAACTTGCATTTAAAATGGCTGCAATATATGCTTTCAGACAGT TTTACACAGCAGCCAAACCTGTTATATTAGAACCTGTCATGCTGGTGGAACTGAAAGTGCCGTCAGAGTTTCAGGGAACAGTTGCTGGGGATATTAACAA GAGGAAAGGTGTCATCGTTGGGAATGACCAGGACGGCGACGACTCCGTAATAACCGCCCACGTTCCGCTAAACAACATGTTCGGATACTCGACTTCGCTC CGGTCAATGACGCAGGGGAAAGGAGAGTTCACGATGGAGTACAAGGAACATTCCGCAGTTTCGAACGACGTCCAGACTCAACTGGTGAACGCTTACAAAG CCAGCAAGACTACTGAATAA
AA sequence Show only first row Show all	>Lus10039840 pacid=23165010 polypeptide=Lus10039840 locus=Lus10039840.g ID=Lus10039840.BGIv1.0 annot-version=v1.0 MARFPRGSASPSLLYSFFTSAANSTRSSPSSPASTLLHGNFHLRQFSSSSAARAKEDNKDPKWKESMGRIRNIGISAHIDSGKTTLTERVLFYTGRIHEI HEVRGRDGVGAKMDSMDLEREKGITIQSAATYCTWNDYQVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRVAFINKL DRMGADPWKVLNQARSKLRHHSAAVQVPIGLEEDLKGLVDLVQMKALYFHGSSGENIVTEDIPADMAAVVGGERSGLYNKYLYLEAIRRATIARKFIPVF MGSAFKNKGVQPLLNGVLSYLPCPIEVSNYALDQTKDEEKVLLTGNPEGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKRIKVPRLVRMH SDEMEDIPEAHAGQIVAVFGMDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFTREDPTFRVGLDPESGQTIISGMGELHLDI YVERIRREYKVDATVGKPRVNFRETITQRAEFDYLHKKQSGGQGQYGRVIGFVEPLPIGSATKFEFENMIVGQAIPSNFIPPIEKGFREAANSGSLIGFP VENLRIVLTDGASHAVDSSELAFKMAAIYAFRQFYTAAKPVILEPVMLVELKVPSEFQGTVAGDINKRKGVIVGNDQDGDDSVITAHVPLNNMFGYSTSL RSMTQGKGEFTMEYKEHSAVSNDVQTQLVNAYKASKTTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45030			Translation elongation factor ...		Lus10039840 [exp]	0	1
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	1.4	0.9149
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	3.5	0.8672
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	3.9	0.8696
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10020081 [exp]	6.0	0.8421
AT5G14580			polyribonucleotide nucleotidyl...		Lus10008763 [exp]	6.8	0.9018
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	7.7	0.8601
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10031994 [exp]	7.9	0.8525
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10035410 [exp]	11.6	0.8406
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10033883 [exp]	14.7	0.8568
AT3G45090			P-loop containing nucleoside t...		Lus10021446 [exp]	15.8	0.7937

Compare expression of checked genes

Lus10039840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.