Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45420 225 / 5e-72 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) AT3G11450 91 / 6e-20 DnaJ domain ;Myb-like DNA-binding domain (.1) AT5G06110 82 / 5e-17 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT5G58900 44 / 7e-05 MYB Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018605 [exp] 455 / 1e-162 AT5G45420 247 / 7e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10036429 [exp] 114 / 1e-31 AT5G45420 93 / 4e-24 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10026920 [exp] 88 / 5e-19 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026919 [exp] 88 / 6e-19 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 87 / 1e-18 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 68 / 2e-12 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10034514 [exp] 54 / 1e-07 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10040696 [exp] 43 / 0.0002 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 41 / 0.0006 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147000 [exp] 296 / 6e-100 AT5G45420 234 / 1e-75 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Potri.001G035800 [exp] 89 / 2e-19 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.003G190000 [exp] 87 / 8e-19 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G219100 [exp] 44 / 4e-05 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1) Potri.009G042600 [exp] 44 / 6e-05 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.007G076200 [exp] 41 / 0.0006 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 41 / 0.0006 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039841 pacid=23165107 polypeptide=Lus10039841 locus=Lus10039841.g ID=Lus10039841.BGIv1.0 annot-version=v1.0 ATGGAGTTTCTAGACGAAGATGCAAGGCCGAGGGTCGTCTTCCAATCACGCCCAGTCATTCCATCGTCACCATCAGATCCACTGGCGGAGCAGAGCAAAC CTTACAACAAACTCTTTCTCGCGGTAACCATCACACTATCTTCGCTCTTGATAGCTCTGTCAATCTACTTCATAGCCAACGAGCCTTACCAATCACTCGC CATCTGGCTATCCCTCTCCCTCCTGATCGGCCCGATCGCGCCGTCGCACATTACAGGCGGCGACATCCGCGTCGGCCAGGGCCCGGTGCTGGAGCCGCTC GATCCGGAGCCGGAGATCGCGACGACAGAGAAAAGATCGTTAAAGCGGCGGCTGAAGCCTGTCAGATCTGATGAGGCGATCGCGAATCAGACTTCGCCGA TGGTGAATGGATCGTCGACGAACGGATCGTCGAGAAAGCAGGAATTTAAAAAAGGTGTTGAGAAAGAGAGCGAAGAAGAGAAGGAATGGAGCGAAGAGGA TTACGTGATTCTGAAGAAGCAAATGGCGAAGAATCCTGTGGGGAAACCGAAGAGGTGGGAGGTGATCGCCGATGCGTTCAACGGGAGGCACAAGGTGGAG AGTGTGATCAAGGCGGCGAAGGATATGGGAGAGAAGAGATCGGACGACGGTGATTCGTATGCGAAGTTTTTGAAGAATAGGAAGCCTGTGGATTCCAGAG TCGATGAAGCAGCTGAAGGGACGGCGGAGGCGGAGGCTGCAGCCTCCCCCGACACGTGGAGCTCCGTGGAGGACATTGCGTTGTTGAATGCTTTGAAGGC GTTCCCGAAAGAGGTGGCGATGAGGTGGGAGAAGATTGCGGCGGCGGTTCCAGGGAAGTCGAAGGCGGCTTGTATGAAGAGGGTTAGCGAGCTGAAGAAG GGGTTTCGGAGCTCCAAAGCCGGCGGCGGCGCTTCCAACTAA
AA sequence Show only first row Show all	>Lus10039841 pacid=23165107 polypeptide=Lus10039841 locus=Lus10039841.g ID=Lus10039841.BGIv1.0 annot-version=v1.0 MEFLDEDARPRVVFQSRPVIPSSPSDPLAEQSKPYNKLFLAVTITLSSLLIALSIYFIANEPYQSLAIWLSLSLLIGPIAPSHITGGDIRVGQGPVLEPL DPEPEIATTEKRSLKRRLKPVRSDEAIANQTSPMVNGSSTNGSSRKQEFKKGVEKESEEEKEWSEEDYVILKKQMAKNPVGKPKRWEVIADAFNGRHKVE SVIKAAKDMGEKRSDDGDSYAKFLKNRKPVDSRVDEAAEGTAEAEAAASPDTWSSVEDIALLNALKAFPKEVAMRWEKIAAAVPGKSKAACMKRVSELKK GFRSSKAGGGASN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	0	1
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	1.4	0.9392
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	2.4	0.9380
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	2.4	0.9466
AT1G23040			hydroxyproline-rich glycoprote...		Lus10043475 [exp]	2.6	0.9331
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	3.2	0.9359
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	4.5	0.9377
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	5.5	0.9222
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	6.0	0.9226
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	6.0	0.9357
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	6.2	0.9053

Compare expression of checked genes

Lus10039841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.