Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 114 / 3e-27 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 105 / 2e-24 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 105 / 4e-24 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 101 / 7e-23 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 92 / 7e-20 O-acyltransferase (WSD1-like) family protein (.1) AT5G37300 91 / 2e-19 WSD1 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 90 / 3e-19 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 90 / 4e-19 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 88 / 2e-18 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 86 / 1e-17 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017718 [exp] 352 / 6e-117 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 335 / 2e-110 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 332 / 7e-109 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 330 / 1e-108 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 317 / 2e-103 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 131 / 4e-33 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 110 / 7e-26 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 98 / 1e-21 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10014075 [exp] 53 / 8e-08 AT5G53390 156 / 5e-45 O-acyltransferase (WSD1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010500 [exp] 399 / 1e-135 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 388 / 3e-131 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 377 / 7e-127 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 372 / 4e-125 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 365 / 2e-122 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 137 / 1e-37 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 114 / 4e-27 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 101 / 7e-23 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070975 [exp] 97 / 2e-21 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 84 / 2e-17 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF03007 [flax] [poplar] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [flax] [poplar] PF06974 [flax] [poplar] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039843 pacid=23165025 polypeptide=Lus10039843 locus=Lus10039843.g ID=Lus10039843.BGIv1.0 annot-version=v1.0 ATGGCGGCAGAAGATCATCAGGCAGTGAGTCCAACTGGGTACTACTTCAACAGCTCAGCCGTGTCGTTCCACATCCTCGCAGTTCTCGAAACCGAAAGGC CCTTTGACGACTCGCAGTTTCTCTCCTCGGTTCGAACCCTGTTCCTCTCGATCAACCCTCGTTTCTGCTCCATCATAGTGAACGACACTAAGGGGAAGAA AATCTGGAAAAAAGTGGAAGTGAACCTGAAAGGCCACGTCTTCACACCAATCTTGCCACGTGGCAACTCCCAACAATTCTACGACCAATGTTTCTCCGAC TACCTCTCCAACCTGTCGTCGTCGGAGCTCCCACCGAGCCAGCCACTCTGGCAGATCCACGTCATCAAGTTTCCATCCACTATCTCCGGCGGCGACAGGA TTGTGTTCAAGCTCCACCACGCTCTCGGTGACGGCTACTCGTTGATGGGCGCGTTGCTTTCCTGCCTTCAGCGAGCCGACGGAGGCGGCGGCGGCCACCT GACATTCCCTTCTCTCCGGCGAGTTTCTGGAAACAGGGTTGGTAAGGGTTTGTCGGTGGGGTTTAATACTGTTGCTGATGTGTGGTTCAGCTTTTGTAGC CGAGGTGGTGGTCAGGATGACGTGTCGCCGATCCGGTCGGAGAATCCTGACGGGTTGGGGTTCCTGCCAATTTCGGTGGCGAGTACGACGTTGGTGCTGG ATGAAGTCAAGCGGATCAAGGGGTTGCTTGGATGCACCGTAAACGAATTGATCACCGGAGCAATTCTACTTGGAGCTCGGCTGTACATGGAAGGAATCGA GCCGGGATCCGGAAACGCACGTTCGACAGCAGTGGTGGTACTCAACACCAGGATGATCAAAGGATACAAGTCAGTTCAGGAAATGAAGAATAAACCTGAC AGGAAGAAGAAATCAGCCTCCTCCTGGGGAAACCAGGTAGCATCTTTTTCACTTCCCATTCCCAAGCTTAATCAGGGAAACGAATACACACCGTTGGATT TCGTCACACAAGCTCGAAAGCTCATCCAACTGAAGAAGAAGTCGCTGGCCGTGTACCTTACCGGAATGCTGACGGACTGCATCAGGAAAACCAAGGGAGC TGAGGCAGCTGCGGCGTTGATAGGGAGCGCGATTCGGAGCTCGAGCGTTATGATTTCGAGCATGGTCGGACCGGTCGAAAAAGTTTCGATCGGGAACCAA CCGATTTCCGGGATTTATTTCGTCGTCGCCGGGAAACCTCAGAGTCTTTCGGCGACGGTGATGAGCTACATGGGAGATGTCAGGATAAGTATCGGAGGGG AGAAAGAGTTTCTGGATTCAAAGAAGTTGGTATCTTGCGTCAAAACTGCTTTCGAAATCATATCCAAAGCTGTTTGTAGCAAAAAATCGTCCTAA
AA sequence Show only first row Show all	>Lus10039843 pacid=23165025 polypeptide=Lus10039843 locus=Lus10039843.g ID=Lus10039843.BGIv1.0 annot-version=v1.0 MAAEDHQAVSPTGYYFNSSAVSFHILAVLETERPFDDSQFLSSVRTLFLSINPRFCSIIVNDTKGKKIWKKVEVNLKGHVFTPILPRGNSQQFYDQCFSD YLSNLSSSELPPSQPLWQIHVIKFPSTISGGDRIVFKLHHALGDGYSLMGALLSCLQRADGGGGGHLTFPSLRRVSGNRVGKGLSVGFNTVADVWFSFCS RGGGQDDVSPIRSENPDGLGFLPISVASTTLVLDEVKRIKGLLGCTVNELITGAILLGARLYMEGIEPGSGNARSTAVVVLNTRMIKGYKSVQEMKNKPD RKKKSASSWGNQVASFSLPIPKLNQGNEYTPLDFVTQARKLIQLKKKSLAVYLTGMLTDCIRKTKGAEAAAALIGSAIRSSSVMISSMVGPVEKVSIGNQ PISGIYFVVAGKPQSLSATVMSYMGDVRISIGGEKEFLDSKKLVSCVKTAFEIISKAVCSKKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	0	1
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	1.0	0.9894
AT5G10770			Eukaryotic aspartyl protease f...		Lus10038732 [exp]	1.7	0.9795
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	2.0	0.9774
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	2.0	0.9814
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	2.8	0.9638
					Lus10020641 [exp]	4.5	0.9738
					Lus10000488 [exp]	5.3	0.9392
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10023210 [exp]	5.3	0.9666
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	6.0	0.9673
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	6.3	0.9606

Compare expression of checked genes

Lus10039843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.