Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44280 324 / 2e-104 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 266 / 4e-83 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT4G21070 52 / 8e-07 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G23060 50 / 3e-06 RING/U-box superfamily protein (.1) AT2G32950 48 / 2e-05 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G06770 47 / 3e-05 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 45 / 0.0001 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G18660 44 / 0.0002 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT2G34000 41 / 0.0004 RING/U-box superfamily protein (.1) AT2G25409 40 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018609 [exp] 736 / 0 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10036151 [exp] 50 / 7e-06 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10022569 [exp] 46 / 2e-05 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10014749 [exp] 47 / 4e-05 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 46 / 8e-05 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10039001 [exp] 46 / 8e-05 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10021993 [exp] 45 / 0.0001 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10019075 [exp] 45 / 0.0002 AT1G18660 583 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) Lus10015722 [exp] 45 / 0.0002 AT1G18660 667 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138700 [exp] 384 / 9e-128 AT5G44280 312 / 3e-100 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.017G013000 [exp] 380 / 1e-126 AT5G44280 355 / 3e-117 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G047000 [exp] 339 / 5e-111 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G056300 [exp] 337 / 1e-110 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G209600 [exp] 50 / 3e-07 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1) Potri.010G077800 [exp] 53 / 4e-07 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.001G358100 [exp] 52 / 8e-07 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.008G161500 [exp] 52 / 8e-07 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 50 / 2e-06 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 49 / 6e-06 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10039845 pacid=23165307 polypeptide=Lus10039845 locus=Lus10039845.g ID=Lus10039845.BGIv1.0 annot-version=v1.0 ATGCCTGCCCACAAGCGTCCGTTTCCGGAGGATTCCAACTCCTACGACGGAGAGGAACAACAACCGCAATCGTCCTCGCCACCTCCTCCTGCTGCTGCAC CGCATCAGAACGGGAACGGCTCATTTTCGAGGCCAGCTCGGAGTGGGATGAAAGCTGAAGAGGAGTCGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGCC GGAGGAGGGAGATGAGAAGCAAGAGGAGGATGAGGAGGAAGACGACGAAGAGGGGGATGAAGATGAAGATGAGGATGAACATACTGGAGGTTCTCATGAA TCTGAATCTGCTAGCTCGGAGGAGGAGGATGAGGAGGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGGGGAAAAGCCTGAGTTTGTTT TCGTTGAACTGCCGGAAATTCGTAAAGACGTGCAATGCCCTATATGTCTAGGGATCATAAAGAAAACAAGAACAGTAATGGAGTGTCTACACCGTTTTTG TAGGGAATGCATTGACAAGTCAATGCGATTGGGGAATAACGAGTGCCCAGCTTGCCGTACCCATTGTGCAACTCGGCGTTCTTTGCGAGATGATCCTAAC TATGATGCTCTAATTGCAGCGCTTTATCCTAATATTGATAAGTATGAAGAAGAGGAATTGGCTTTCCATGAAGAAGAGAAGACTCGGAACAAGCAGATAC AAGCATCGATCGCCCAAATATTCCAAAGGCAGTCGGAAGCATTGGCAAGGAGACGAACCAACGGAAAAGAGTCGACCACTCCGTTTTCCGCAAGATCACA GAGGAACCTTCGAACTACTCAATCAAGGCGACAGAGAAACAGCAGAAGAAACATGGATTATCACGGATCCGAAGACAATGAGGAAGAAAATGAAGACATG GTGGGAGGCAAAGATTCATCTTCGGCTGATGAACACTCTCCAGATGTCAGGCCGAGAAGACGAAAAAGACGACCAGGGTTGAGGACCTCTCAGCCTTCTT CCTCCGGAATGAATTCTGATGCAGTTGAGAATGATCAAGAGACTAGCCGGGACTGGGGGCTGGCTCCTGCGCTTGTACGAAATAACGAAATGCTTGCTTG GGGCAGGGGTGGCACCCGAAGCAACACTAGGCATGGTGTAGCTAGTGGCAGCAATAACAGGCATATGCGGATCAATCGCATATCGAGGCTGGTGGAACAT CTTAGGAATACATCGGTTGAGGACAAGAATGAGGACGAGTCGGATTTGAATCTGATAGTAATCCCTCTGGAGAAAGAATCCACACCAAGTTTGGAGCAGC CTTATATTCGCTGCAGATCCACCTCATCTATCGGACAACTCCGTGAGTTCATTGCTGTGAAATCGTCACTGGAGGCTGAAAACGTCGATCTCTTCATGGC CACTGAGTTCTACGAAACGCTTCCCACGCTGCAAACACCAGCTTCGAGGAGCAGCCTGAGGGTATTGGAGAACAACGACGAAACGCTAGCAACGATAACT AGAGGCCATGTCGACTTCCCTATGAGCTACCTTCCCAGAAGCTATTGGATTGTGGCATTCAGTAAGAAGCAAAAGACGAAGACCGAGCCTGATGTTGAGC CAAAAATTGAGAAAATTGAGCTGGATACTGCTGTTCCGATGGAGGCCGAGTCGTCTGGTGTGAAAGAGGAAGCCAAAGAGATGGCTGAATAG
AA sequence Show only first row Show all	>Lus10039845 pacid=23165307 polypeptide=Lus10039845 locus=Lus10039845.g ID=Lus10039845.BGIv1.0 annot-version=v1.0 MPAHKRPFPEDSNSYDGEEQQPQSSSPPPPAAAPHQNGNGSFSRPARSGMKAEEESEEEEEEEEEEPEEGDEKQEEDEEEDDEEGDEDEDEDEHTGGSHE SESASSEEEDEEEEEEEEEEEEEEEEGEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCATRRSLRDDPN YDALIAALYPNIDKYEEEELAFHEEEKTRNKQIQASIAQIFQRQSEALARRRTNGKESTTPFSARSQRNLRTTQSRRQRNSRRNMDYHGSEDNEEENEDM VGGKDSSSADEHSPDVRPRRRKRRPGLRTSQPSSSGMNSDAVENDQETSRDWGLAPALVRNNEMLAWGRGGTRSNTRHGVASGSNNRHMRINRISRLVEH LRNTSVEDKNEDESDLNLIVIPLEKESTPSLEQPYIRCRSTSSIGQLREFIAVKSSLEAENVDLFMATEFYETLPTLQTPASRSSLRVLENNDETLATIT RGHVDFPMSYLPRSYWIVAFSKKQKTKTEPDVEPKIEKIELDTAVPMEAESSGVKEEAKEMAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	0	1
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	1.0	0.9390
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	2.0	0.9227
					Lus10005797 [exp]	2.6	0.9125
AT5G02520			unknown protein		Lus10025814 [exp]	4.2	0.9111
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	4.9	0.9114
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	5.8	0.9019
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	6.3	0.9015
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	6.9	0.9209
AT2G35035		URED	urease accessory protein D (.1...		Lus10030170 [exp]	7.2	0.9056
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	7.7	0.9064

Compare expression of checked genes

Lus10039845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.