Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53160 129 / 5e-38 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT3G15270 129 / 8e-38 SBP SPL5 squamosa promoter binding protein-like 5 (.1) AT2G33810 118 / 5e-34 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G69170 122 / 6e-33 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G42200 118 / 1e-31 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G02065 117 / 2e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G60030 120 / 3e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT2G47070 115 / 7e-30 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G20980 114 / 4e-29 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G57920 110 / 9e-29 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018610 [exp] 297 / 1e-103 AT3G15270 127 / 7e-37 squamosa promoter binding protein-like 5 (.1) Lus10005548 [exp] 125 / 3e-36 AT3G15270 133 / 1e-39 squamosa promoter binding protein-like 5 (.1) Lus10015421 [exp] 120 / 9e-35 AT2G33810 128 / 4e-39 squamosa promoter binding protein-like 3 (.1) Lus10013999 [exp] 120 / 1e-34 AT2G33810 128 / 6e-39 squamosa promoter binding protein-like 3 (.1) Lus10028181 [exp] 123 / 8e-34 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 118 / 7e-32 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10021614 [exp] 117 / 3e-31 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10036812 [exp] 117 / 8e-31 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 117 / 1e-30 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G138800 [exp] 174 / 4e-55 AT3G15270 140 / 4e-42 squamosa promoter binding protein-like 5 (.1) Potri.001G398200 [exp] 141 / 2e-42 AT1G53160 162 / 6e-51 squamosa promoter binding protein-like 4 (.1.2) Potri.011G116800 [exp] 140 / 2e-41 AT3G15270 159 / 5e-49 squamosa promoter binding protein-like 5 (.1) Potri.004G046700 [exp] 124 / 2e-36 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.011G055900 [exp] 124 / 2e-36 AT2G33810 129 / 2e-39 squamosa promoter binding protein-like 3 (.1) Potri.014G057700 [exp] 119 / 3e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142200 [exp] 118 / 3e-32 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.010G154000 [exp] 122 / 6e-32 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G142400 [exp] 117 / 2e-31 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.008G098600 [exp] 119 / 4e-31 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10039846 pacid=23165052 polypeptide=Lus10039846 locus=Lus10039846.g ID=Lus10039846.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGGGAGAAGGGAAGCAGAAGAAAATGATGGTGGTAAAGAAGGAATCCGGCGACGATTCCGACTCAACTGATGAGTATGGCCAGCAGCATC AGGGGATGGGTTATTTCTTTGATGATGATGATGATGATTCGTCTGAGTCTTGTAAGAAGAAGAAGCTAGTTATCGGTAATAGTATTACTGCTTCTTTCGC CGGCGGCGAAAGAAGGGTGTCGGGCGGCGGCAGGTGCTGTCAGGCGGAGAAGTGTACGAATGATTTGACTGTGGCGAAGGCGTACCACAGGAGGCATAGG GTGTGTGAGTACCATTCGAAAGCTCAGGTTGTGCTTGTTTCTGGGTTGAGGCAGAGGTTTTGCCAGCAATGCAGCAGATTCCACGAGCTGCCGGAGTTCG ACGACATGAAGAGGAGCTGCCGGCGGCGTCTGGCGGGGCACAACGAGCGGCGGAGGAAGAATGCAGCTGCTGATTCTCATCCTCATAATCATCCCCATGA AGGATCTTCAGCCATGAAAGAAGACACCATTTGCGGCCAAGTTGATCCCAGGGGAAGAATAAAGATCGTCACCGCAGAGAATCCAAGTTACAAGCATTTC CAGATCAGATGA
AA sequence Show only first row Show all	>Lus10039846 pacid=23165052 polypeptide=Lus10039846 locus=Lus10039846.g ID=Lus10039846.BGIv1.0 annot-version=v1.0 MEEGGEGKQKKMMVVKKESGDDSDSTDEYGQQHQGMGYFFDDDDDDSSESCKKKKLVIGNSITASFAGGERRVSGGGRCCQAEKCTNDLTVAKAYHRRHR VCEYHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDMKRSCRRRLAGHNERRRKNAAADSHPHNHPHEGSSAMKEDTICGQVDPRGRIKIVTAENPSYKHF QIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Lus10039846 [exp]	0	1
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Lus10018610 [exp]	1.0	0.8773
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	9.2	0.8299
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Lus10024667 [exp]	15.7	0.8566
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	17.3	0.8510
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	20.1	0.8132
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	21.3	0.8149
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	22.6	0.8115
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	24.5	0.7720
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	25.5	0.8520
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10008954 [exp]	26.6	0.8330

Compare expression of checked genes

Lus10039846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.