Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28390 517 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G13490 494 / 4e-176 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 484 / 4e-172 AAC1 ADP/ATP carrier 1 (.1.2) AT5G17400 360 / 2e-124 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 207 / 4e-64 PM-ANT Mitochondrial substrate carrier family protein (.1) AT2G37890 121 / 2e-31 Mitochondrial substrate carrier family protein (.1) AT4G26180 117 / 5e-30 Mitochondrial substrate carrier family protein (.1) AT1G14560 117 / 8e-30 Mitochondrial substrate carrier family protein (.1) AT3G55640 115 / 2e-29 Mitochondrial substrate carrier family protein (.1) AT3G53940 111 / 2e-27 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016418 [exp] 515 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 515 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 508 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 506 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 491 / 6e-175 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 487 / 2e-173 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10034658 [exp] 350 / 2e-120 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 340 / 3e-116 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 315 / 3e-108 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G139100 [exp] 527 / 0 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.017G012800 [exp] 525 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.009G062200 [exp] 513 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 508 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.003G204600 [exp] 507 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G019400 [exp] 506 / 1e-180 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.012G062500 [exp] 332 / 7e-113 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 210 / 3e-65 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 119 / 1e-30 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 116 / 1e-29 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10039847 pacid=23165127 polypeptide=Lus10039847 locus=Lus10039847.g ID=Lus10039847.BGIv1.0 annot-version=v1.0 ATGGCGGATTTATCAAAGCATCCATCAGTTGTTCAGAAGATGTACGTGCAATGGTCCCTTGATCCGAGTCCGAGACCTTCTCCTAATGTAGAAAGCAGGT GTGTGAATGGGAATGAAGCTAATGGAATGCAGGGCACTGTTGTGGAAGTTTCTCCAAACCATTCTTCCATGCCAGCAGCAGCGCCTACTGAGAAAGGTCT AGGTGCGTTCATGACTGATTTCCTCATGGGAGGAGTATCCGCCGCAGTTTCCAAGACTGCAGCTGCTCCGATTGAGCGTGTCAAGCTCTTGATTCAGAAT CAAGACGAGATGATTAAAGCTGGCCGTCTTTCCCATCCGTATAGGGGAATCGGTGACTGTTTTGCTAGAACCATGAAAGACGAAGGAGTGCTTGCTCTTT GGAGAGGCACCCCGGCCAATGTTATCAGATACTTCCCTACTCAGGCACTGAACTTTGCCTTCAAAGATTACTTCAAGAGGTTGTTTAACTTCAAGAAAGA TAAGGATGGGTACTCGAAGTGGTTTGCTGGGAACTTGATGTCTGGTGGAGCTGCTGGTGCCTCTTCTCTTCTGTTCGTGTACTCACTCGATTATGCTCGA ACACGTTTGGCGAACGATGCTAAGGCAGCTAAAAGGGGCGGCAGTAGGCAGTTCGATGGTTTGATTGACGTGTATAAGAAGACCATCAGAAGCGACGGGA TTGCTGGTCTTTACCGTGGTTTCAACATATCTTGCGTTGGAATTATTGTCTACCGGGGACTCTACTTCGGCATGTACGACTCTCTTAAGCCCCTGCTTCT GGTTGGAGATTTGCAGGATAAGTTCTTCCCAAGCTTCCTACTCGGATGGGGCATCACAATCGGAGCCGGGTTAGCATCCTACCCCATCGATACTGTCCGT AGAAGAATGATGATGACCTCAGGGGAAACCGTCAAGTACAAGAGCTCCATCGACGCGTTCAAACAGATCGTCAAGAATGAAGGCTCGAAGTCCCTCTTCA AAGGTGCAGGTGCCAACATCCTCCGCGCAGTTGCAGGCGCTGGTGTCCTAGCTGGCTACGATAAGCTGCAGCTGGTGGTCTTTGGCAAGAAGTACTGA
AA sequence Show only first row Show all	>Lus10039847 pacid=23165127 polypeptide=Lus10039847 locus=Lus10039847.g ID=Lus10039847.BGIv1.0 annot-version=v1.0 MADLSKHPSVVQKMYVQWSLDPSPRPSPNVESRCVNGNEANGMQGTVVEVSPNHSSMPAAAPTEKGLGAFMTDFLMGGVSAAVSKTAAAPIERVKLLIQN QDEMIKAGRLSHPYRGIGDCFARTMKDEGVLALWRGTPANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYSKWFAGNLMSGGAAGASSLLFVYSLDYAR TRLANDAKAAKRGGSRQFDGLIDVYKKTIRSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPLLLVGDLQDKFFPSFLLGWGITIGAGLASYPIDTVR RRMMMTSGETVKYKSSIDAFKQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQLVVFGKKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10039847 [exp]	0	1
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10034669 [exp]	5.9	0.8812
AT2G19540			Transducin family protein / WD...		Lus10024403 [exp]	10.7	0.9135
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	12.3	0.9171
AT1G07210			Ribosomal protein S18 (.1)		Lus10038756 [exp]	16.4	0.8537
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10017709 [exp]	21.8	0.9127
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	27.7	0.9069
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	32.6	0.9062
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	33.1	0.9065
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	34.1	0.9008
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Lus10033666 [exp]	36.8	0.8928

Compare expression of checked genes

Lus10039847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.