Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20650 802 / 0 RING/U-box superfamily protein (.1.2) AT4G28370 796 / 0 RING/U-box superfamily protein (.1) AT4G12190 51 / 3e-08 RING/U-box superfamily protein (.1) AT2G44578 50 / 5e-07 RING/U-box superfamily protein (.1) AT2G44581 50 / 5e-07 RING/U-box superfamily protein (.1) AT4G05350 49 / 2e-06 RING/U-box superfamily protein (.1) AT1G74620 49 / 2e-06 RING/U-box superfamily protein (.1) AT5G47610 47 / 7e-06 RING/U-box superfamily protein (.1) AT3G19950 48 / 8e-06 RING/U-box superfamily protein (.1) AT2G35420 47 / 1e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018613 [exp] 989 / 0 AT2G20650 815 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024629 [exp] 50 / 4e-07 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10040783 [exp] 49 / 6e-06 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10012819 [exp] 48 / 6e-06 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10017383 [exp] 45 / 1e-05 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1) Lus10033425 [exp] 45 / 2e-05 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1) Lus10023507 [exp] 47 / 3e-05 AT2G37150 138 / 4e-35 RING/U-box superfamily protein (.1.2.3) Lus10020258 [exp] 47 / 3e-05 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 47 / 3e-05 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012600 [exp] 872 / 0 AT2G20650 893 / 0.0 RING/U-box superfamily protein (.1.2) Potri.007G139300 [exp] 857 / 0 AT2G20650 867 / 0.0 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 54 / 2e-08 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.011G119900 [exp] 53 / 4e-08 AT1G14200 60 / 9e-12 RING/U-box superfamily protein (.1) Potri.001G400600 [exp] 51 / 1e-07 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.007G107000 [exp] 51 / 6e-07 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G118000 [exp] 50 / 1e-06 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.008G058100 [exp] 49 / 8e-06 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G223200 [exp] 48 / 1e-05 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 48 / 1e-05 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10039848 pacid=23165163 polypeptide=Lus10039848 locus=Lus10039848.g ID=Lus10039848.BGIv1.0 annot-version=v1.0 ATGGTTTCCAGGGAGTATTTGAGAGGTTTAGGGTTAGTGTATTGGGTTGGTTTCTTCTGTTTGTTTTGGGTTTTGGTTCTGGTTCGACCAGTGGTTGGAT TGAGGCCCTTGAGGGATCAGAAACAGTCATGGGGAGACGAGTGGCTATTTGTTAGAAAAGAAGAAAATGACCTGGGCCCATTCTCTGCGTGGAACATTAC AGGAACTTACCGAGGGTCTTGGAAGTTCCTCGATTCTACAAACAGCTCTTCAAAGTTTCCAGATTTCAGGAACTCAAATGGCGATTCGGTTATCGAGTTG GTCACCACACAGACCAAAATAACCGGGGTGCACTATGTCCAGGGTGTAATTATTTTCCATGACGTGTTTGATAACGAGCACAATGTTGGGGGTGCTCAAA TCAGGGTGGAAGGTGTTTATATATGGCCATTTAGACAACTTCGAATGGTGGCTAGCAGTCAGAAAGAGGGAGAGTTTGGTCAGGAAGATGATTATATCTT GTCTAATCCGTATCATCTGCTTGGCGTTTTCTCTTCTCAGGTTTTCCAGGACTCTCCCAAAGAGAAGATGTGGAGAAGGAAAAATTGCGGAGATCGCGAC CGTTACCACTTAGAGGGACTAATGGAGAGTCCTGCGGTGGACGATGACGGGGAATGCTTCTCCCCCTTGCTACTGAATGCTACTTCGGTAAACATCGAGG TCTACTACAACAAAGCAGTAAACTATACATTGATGGTCACTTTTGTTTCATTTCTTCAAGTGCTTTTGCTGATACGTCAGATGGAACATAGTAACACACA ATCGGGGGCCGCCAAAGTTTCGATCTTGATGATCGGCCAGCAGGCGATCATGGACGCTTACCTTTGCCTTTTACACTTGACTGCCGGAATCTTAGTCGAG TCCTTGTTCAATGCTTTTGCTACTGCTGCATTTTTCAAGTTCGTGGTCTTTTCAATTTTCGAAATGCGATATCTTCTGGCCATATGGAAGGCGAGCCGGC CTGCCAGCAGCGGTGAAGGTTGGGAAGCGATGAGGCGCGAGCTTTCGGTTTTGTATAGTCGATTTTATGGAATTCTTCTGGGAGGCATTTTGCTAATGTA TGAGTTCCACAACTTCCTACGGCCGATTCTCCTCCTGATGTACTCATTCTGGATACCTCAGATCGTTACAAACGTGATTCGAGATTCGAGGAAGCCTCTG CATCCTTACTACATCTTAGGCATAACGGTTACTCGGTTAGCGGTCCCGCTGTATATATTTGGATGTCCTAACAACTTCATGCGGATCGAGCCGGACAAGA CGTGGTGCACGTCGTTGGTTATGTTTGTCGGTTTGCAGGCCTCGGTTCTACTCCTTCAAAACTATCTCGGATCCCGATGGTTCATCCCTCGTCAGATCCT GCCGGAGAAATACAGTTACTTCAGGAAATTTGATCTCGAAGAAAGTCACGCGACAGATTGCGTAATATGCATGACATCGATCGATATGATGCAGCGTCCG AGCGATTGCATGGTAACGCCGTGCGATCATTTCTTCCACTCCGGCTGTCTACAAAGATGGATGGATATCAAGATGGAATGCCCAACCTGCCGGCGTCCAC TGCCACCAGCGTAG
AA sequence Show only first row Show all	>Lus10039848 pacid=23165163 polypeptide=Lus10039848 locus=Lus10039848.g ID=Lus10039848.BGIv1.0 annot-version=v1.0 MVSREYLRGLGLVYWVGFFCLFWVLVLVRPVVGLRPLRDQKQSWGDEWLFVRKEENDLGPFSAWNITGTYRGSWKFLDSTNSSSKFPDFRNSNGDSVIEL VTTQTKITGVHYVQGVIIFHDVFDNEHNVGGAQIRVEGVYIWPFRQLRMVASSQKEGEFGQEDDYILSNPYHLLGVFSSQVFQDSPKEKMWRRKNCGDRD RYHLEGLMESPAVDDDGECFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVE SLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPASSGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNFLRPILLLMYSFWIPQIVTNVIRDSRKPL HPYYILGITVTRLAVPLYIFGCPNNFMRIEPDKTWCTSLVMFVGLQASVLLLQNYLGSRWFIPRQILPEKYSYFRKFDLEESHATDCVICMTSIDMMQRP SDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20650			RING/U-box superfamily protein...		Lus10039848 [exp]	0	1
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	2.2	0.9736
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	4.5	0.9376
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	4.6	0.9679
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	4.7	0.9700
AT3G14170			Plant protein of unknown funct...		Lus10013177 [exp]	4.9	0.9591
AT2G20650			RING/U-box superfamily protein...		Lus10018613 [exp]	4.9	0.9554
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	6.3	0.9571
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10036948 [exp]	6.6	0.9361
AT1G68260			Thioesterase superfamily prote...		Lus10031959 [exp]	6.9	0.9435
					Lus10040842 [exp]	10.9	0.9532

Compare expression of checked genes

Lus10039848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.