Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018616 [exp] 114 / 4e-30 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039851 pacid=23165237 polypeptide=Lus10039851 locus=Lus10039851.g ID=Lus10039851.BGIv1.0 annot-version=v1.0 ATGCATCGTAGGAGGTTTTCGCAGTCCCGGCCACGGTGCTTGACGATCGGGAGCTCGAAGAAGATGAGAGGGGAAATGTTCTACGGTGGGCCACATCAAG AAGATGAGCTATATTCTAAGTGGTCAGAGCTAAGGTCGAAAAGACTGAAGGAGGCCACTAACTTTCTGTCTGCAAATGGAGAAGAGGAGGAATCAGACGA GGATGTCGACGCTGATGGTTCGAGATTGGAAGACGACATGGAATGGCTTGATTACTGCGATGATGACGACGCTGATGGTTCGAGATTGGAAGACGACATG GAATGGCTTGATTACTGCGATGATGACGACGATGAAGAAGAAGGAGATAAGAGTGAGCTTTATGAGGTTTCTGAAGAGGAAGGAGATGAAGAAACAGACT AG
AA sequence Show only first row Show all	>Lus10039851 pacid=23165237 polypeptide=Lus10039851 locus=Lus10039851.g ID=Lus10039851.BGIv1.0 annot-version=v1.0 MHRRRFSQSRPRCLTIGSSKKMRGEMFYGGPHQEDELYSKWSELRSKRLKEATNFLSANGEEEESDEDVDADGSRLEDDMEWLDYCDDDDADGSRLEDDM EWLDYCDDDDDEEEGDKSELYEVSEEEGDEETD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039851 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10036899 [exp]	1.0	0.8189
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Lus10043260 [exp]	6.5	0.7967
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	9.9	0.7991
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	11.3	0.7605
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001558 [exp]	14.4	0.7569
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	17.0	0.7513
AT1G33560		ADR1	ACTIVATED DISEASE RESISTANCE 1...		Lus10032759 [exp]	22.8	0.7446
AT4G03400		GH3-10, DFL2	DWARF IN LIGHT 2, Auxin-respon...		Lus10018565 [exp]	25.3	0.7542
AT1G28150			unknown protein		Lus10030561 [exp]	40.3	0.7313
AT1G31790			Tetratricopeptide repeat (TPR)...		Lus10035697 [exp]	43.1	0.7117

Compare expression of checked genes

Lus10039851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.