Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28400 428 / 9e-153 Protein phosphatase 2C family protein (.1) AT2G20630 422 / 2e-150 PIA1 PP2C induced by AVRRPM1 (.1.2) AT3G15260 395 / 8e-140 Protein phosphatase 2C family protein (.1.2) AT1G22280 323 / 2e-111 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 313 / 3e-107 Protein phosphatase 2C family protein (.1) AT1G78200 305 / 3e-104 Protein phosphatase 2C family protein (.1.2) AT2G34740 298 / 1e-100 Protein phosphatase 2C family protein (.1.2) AT5G24940 221 / 2e-69 Protein phosphatase 2C family protein (.1) AT4G31750 217 / 3e-69 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 218 / 5e-69 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018618 [exp] 582 / 0 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 345 / 8e-120 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 343 / 8e-119 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 335 / 3e-116 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 330 / 1e-113 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10005405 [exp] 303 / 9e-104 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10033453 [exp] 300 / 1e-102 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 300 / 3e-102 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 291 / 7e-98 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013300 [exp] 461 / 6e-166 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 403 / 4e-143 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 394 / 2e-139 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.006G081400 [exp] 338 / 5e-117 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 334 / 2e-115 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 328 / 2e-113 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 328 / 3e-113 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 216 / 2e-69 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 213 / 3e-68 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 210 / 1e-66 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10039853 pacid=23165184 polypeptide=Lus10039853 locus=Lus10039853.g ID=Lus10039853.BGIv1.0 annot-version=v1.0 ATGACAGGCACTGGCAGAGAAATCCTCCATAAAATGAAGGTGAAGGCAGGACTATGTGCAACAGGATCCGAACCGGCGAAAGGCAAAGGCAAAGTGTACG ACCACATTACTTACGGTTCTCATATGGTGAAGGGGAAATCACACCACGCCATGGAAGACTACGTAGTCTCCGACCTCAAGCACGTAAACAACCACGAACT TGGTCTGTTCGCGATCTTTGATGGCCATTTAGGCCACGACGTCGCCAACTACTTGCAAAGCCACTTGTTTGGCAACATACTCAAAGAGAGTGACTTCTGG TCTGATACAGAAACCGCCATAAAGAATGCTTACATAAAGACCGATGCTGAGATACTCGAGAGAGCACTCACCTTGGGGAAAGGAGGATCGACCGCTGTCA CAGCCATACTGATCGATGGATCGAAGCTTGTGGTGGCGAATGTTGGGGATTCTCGCGCTGTCATATGCAGGAATGGCGTGGCGAAACAGCTTTCGGTCGA TCACGAGCCTAGCAAGGAGAAGAGGATGATCGAGAGCCGCGGTGGATTTGTGTCCAACATTCCTGGGGATGTTCCGAGAGTCGATGGGCAGTTGGCGGTG GCGAGGGCGTTTGGGGATCGGAGCTTGAAGGTCCACCTTAGCTCGGAACCGGATGTGTCGGAGGAGACGGTCGATGATGAGGCCGAGTTCCTCATCCTTG CTAGTGACGGTGTATGGAAGGTGATGTCGAACCAAGAAGCAGTGGACTGCATCAAGACCACAAAGGACGCGAAGACGGCAGCGAATCAGGTGATCGAGGA GGCCCTTTCGAGGAAGAGCAAGGACGACATATCTTGCATAGTTGTGAGGTTCCAATGA
AA sequence Show only first row Show all	>Lus10039853 pacid=23165184 polypeptide=Lus10039853 locus=Lus10039853.g ID=Lus10039853.BGIv1.0 annot-version=v1.0 MTGTGREILHKMKVKAGLCATGSEPAKGKGKVYDHITYGSHMVKGKSHHAMEDYVVSDLKHVNNHELGLFAIFDGHLGHDVANYLQSHLFGNILKESDFW SDTETAIKNAYIKTDAEILERALTLGKGGSTAVTAILIDGSKLVVANVGDSRAVICRNGVAKQLSVDHEPSKEKRMIESRGGFVSNIPGDVPRVDGQLAV ARAFGDRSLKVHLSSEPDVSEETVDDEAEFLILASDGVWKVMSNQEAVDCIKTTKDAKTAANQVIEEALSRKSKDDISCIVVRFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28400			Protein phosphatase 2C family ...		Lus10039853 [exp]	0	1
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10033493 [exp]	2.0	0.8716
AT1G11300			protein serine/threonine kinas...		Lus10007600 [exp]	2.8	0.8603
AT3G50150			Plant protein of unknown funct...		Lus10039780 [exp]	3.0	0.8729
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011861 [exp]	3.0	0.8589
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	4.9	0.8993
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	5.5	0.8838
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	6.5	0.8660
AT4G39830			Cupredoxin superfamily protein...		Lus10022504 [exp]	7.1	0.8572
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	7.4	0.8715
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10020735 [exp]	8.1	0.8539

Compare expression of checked genes

Lus10039853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.