Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44240 436 / 6e-146 ALA2 aminophospholipid ATPase 2 (.1.2) AT5G04930 166 / 1e-46 ALA1 aminophospholipid ATPase 1 (.1) AT1G13210 151 / 2e-41 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT1G59820 150 / 5e-41 ALA3 aminophospholipid ATPase 3 (.1) AT3G27870 146 / 1e-39 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 143 / 1e-38 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 141 / 5e-38 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G25610 140 / 1e-37 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 138 / 7e-37 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 137 / 1e-36 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018619 [exp] 439 / 1e-158 AT5G44240 389 / 1e-128 aminophospholipid ATPase 2 (.1.2) Lus10033406 [exp] 171 / 2e-48 AT5G04930 1704 / 0.0 aminophospholipid ATPase 1 (.1) Lus10034872 [exp] 170 / 4e-48 AT5G04930 1712 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028873 [exp] 160 / 2e-44 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008945 [exp] 159 / 4e-44 AT5G04930 1681 / 0.0 aminophospholipid ATPase 1 (.1) Lus10028875 [exp] 154 / 3e-42 AT5G04930 1694 / 0.0 aminophospholipid ATPase 1 (.1) Lus10022238 [exp] 153 / 5e-42 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10036682 [exp] 152 / 1e-41 AT1G59820 1990 / 0.0 aminophospholipid ATPase 3 (.1) Lus10030809 [exp] 150 / 4e-41 AT1G59820 2006 / 0.0 aminophospholipid ATPase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013500 [exp] 435 / 8e-146 AT5G44240 1940 / 0.0 aminophospholipid ATPase 2 (.1.2) Potri.008G014400 [exp] 167 / 6e-47 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014600 [exp] 164 / 4e-46 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.016G138000 [exp] 162 / 2e-45 AT5G04930 861 / 0.0 aminophospholipid ATPase 1 (.1) Potri.006G109200 [exp] 161 / 4e-45 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 161 / 5e-45 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.001G349100 [exp] 149 / 6e-41 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G043300 [exp] 147 / 4e-40 AT1G17500 1891 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G197500 [exp] 138 / 6e-37 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 135 / 4e-36 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10039854 pacid=23165229 polypeptide=Lus10039854 locus=Lus10039854.g ID=Lus10039854.BGIv1.0 annot-version=v1.0 ATGAAGCGATTCGTGTATATCAACGACGACGAGTCGCCGACGCAGGATCTCTACTGCGACAACCGCATTTCTAACCGGAAGTACACTTTCTGGAACTTCC TCCCCAAGAATCTATGGGAGCAGTTCAGCCGGTTTATGAACCAGTACTTCTTGTTGATTGCTTGCCTTCAGCTATGGTCACTAATCACTCCAGTAAATCC TGCAAGTACATGGGGTCCCTTGATCTTTATTTTTGCTGTCTCCGCATCGAAAGAGGCTTGGGACGATTATAATAGGTCTCTCTCTGACAAGAAGGCTAAT GAGAAAGAAGTCTGGATCGTTAAGCACGGACTGAAAAAACCTATCCGAGCACAAGACATACGAGTGGGTGACATTGTGTGGCTTCGGGAGAATGACGAAG TTCCATGTGATCTTGTTCTGCTTGGTACCTCAGAGCCTCAAGGCCTTTGCTACATAGAGACATCTGCTCTTGATGGTGAAACCGATCTCAAAACTAGAGG TATATCATCTGCTTGTGCTGGAATCGATTCAGAGTCTCTTATCATATGCTATCTTCAGGGTGTTATTGAGTGCCCCAATCCAGATAAGGACATCCGGAGA TTTGATGCAAATCTACGTCTGTTCCCTCCCTTTATCGATACTGATGTTTGCCCATTAACAATAAAGAACACGGTTCTCCAGTCATGCTACTTGCGGAATA CAGAATGGGCTTGTGGGGTAGCTGTCTACACAGGCATGTATACGTTAATAATGTTTGCTTAG
AA sequence Show only first row Show all	>Lus10039854 pacid=23165229 polypeptide=Lus10039854 locus=Lus10039854.g ID=Lus10039854.BGIv1.0 annot-version=v1.0 MKRFVYINDDESPTQDLYCDNRISNRKYTFWNFLPKNLWEQFSRFMNQYFLLIACLQLWSLITPVNPASTWGPLIFIFAVSASKEAWDDYNRSLSDKKAN EKEVWIVKHGLKKPIRAQDIRVGDIVWLRENDEVPCDLVLLGTSEPQGLCYIETSALDGETDLKTRGISSACAGIDSESLIICYLQGVIECPNPDKDIRR FDANLRLFPPFIDTDVCPLTIKNTVLQSCYLRNTEWACGVAVYTGMYTLIMFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039854 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018619 [exp]	1.0	0.9708
AT2G07360			SH3 domain-containing protein ...		Lus10027587 [exp]	3.5	0.9612
AT3G14470			NB-ARC domain-containing disea...		Lus10002736 [exp]	3.7	0.9393
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	4.5	0.9585
AT5G15680			ARM repeat superfamily protein...		Lus10031961 [exp]	5.5	0.9608
AT3G12590			unknown protein		Lus10005160 [exp]	7.3	0.9436
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	11.4	0.9506
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Lus10018743 [exp]	11.5	0.9485
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019751 [exp]	12.0	0.9396
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	13.3	0.9385

Compare expression of checked genes

Lus10039854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.