Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44240 1383 / 0 ALA2 aminophospholipid ATPase 2 (.1.2) AT3G27870 385 / 9e-118 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G17500 381 / 3e-116 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 370 / 4e-112 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G25610 367 / 3e-111 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 365 / 2e-110 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT5G04930 362 / 9e-110 ALA1 aminophospholipid ATPase 1 (.1) AT1G68710 361 / 7e-109 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 315 / 2e-92 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 315 / 4e-92 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018620 [exp] 1545 / 0 AT5G44240 1309 / 0.0 aminophospholipid ATPase 2 (.1.2) Lus10022238 [exp] 374 / 7e-114 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 369 / 8e-112 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 362 / 3e-109 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 358 / 1e-108 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006881 [exp] 360 / 3e-108 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 357 / 2e-107 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10028873 [exp] 337 / 4e-100 AT5G04930 1676 / 0.0 aminophospholipid ATPase 1 (.1) Lus10008947 [exp] 333 / 4e-99 AT5G04930 1644 / 0.0 aminophospholipid ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013500 [exp] 1409 / 0 AT5G44240 1940 / 0.0 aminophospholipid ATPase 2 (.1.2) Potri.006G109200 [exp] 403 / 7e-124 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1) Potri.012G058000 [exp] 375 / 3e-114 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 367 / 3e-111 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 350 / 6e-105 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 343 / 3e-102 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G014600 [exp] 338 / 2e-100 AT5G04930 1665 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G014400 [exp] 333 / 5e-99 AT5G04930 1610 / 0.0 aminophospholipid ATPase 1 (.1) Potri.010G246200 [exp] 332 / 3e-98 AT5G04930 1693 / 0.0 aminophospholipid ATPase 1 (.1) Potri.008G191400 [exp] 332 / 3e-98 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10039855 pacid=23165384 polypeptide=Lus10039855 locus=Lus10039855.g ID=Lus10039855.BGIv1.0 annot-version=v1.0 ATGTCTCCTGGTGTTTTTCTTCCAGGAAATGAAACAAAGCTGGGTATGAGCAGGGGTATACCTGAACCTAAACTTACAGCTATGGATGCCATGATTGACA AATTGACTGGTGCCATATTTGTCTTCCAGATAGTAGTTGTTGTAGTTCTTGGCATAGCAGGGAATGTGTGGAAGGACACTGAAGCAAGGAAGCAATGGTA TGTTCAATATCCCAAAGAAGGACCGTGGTATGAACTACTGATAATCCCTCTAAGATTTGAGCTCCTTTGTTCAATCATGATACCAATCTCTATCAAGGTA TCTTTGGATCTTGTGAAGAGTTTATATGCTAAGTTCATTGACTGGGATGTTGAGATGTTTGATCCAGAAACAGGCTCTTCATCTCATGCAACAAATACAG CGATAAGTGAAGACCTGGGACAGGTTGAGTACATTATGACTGACAAAACTGGAACTCTGACTGAGAACAAGATGGTCTTCAGGAGGTGTTGTATCAATGG CATATTCTATGGTAATGAAAGTGGGGATGCTTTGAAAGATACAAGATTGCTCAATGCTGTTGCCGGTGGGTCTCCTGATGTCATTCGGTTTCTGACTGTC ATGGCAATATGCAATACTGTTATACCAGTGCAAAGCAAAAGTGGAAATATTCTCTATAAAGCACAGTCTCAGGATGAAGAAGCTCTTGTCAAGGCTGCTG CTAAGTTGCATATGGTTTTCTTCAGTAAAAGCGGAAATCTTCTTGAAATCAGATTCAACGGTTCAGTAATTAACTATGAAGTCTTGGATACCCTGGAGTT CACTTCTGACAGGAAAAGAATGTCAGTAGTAGTGAGAGACGCCCGAAATGGCAAGATTTACCTCTTGTCCAAAGGAGCAGATGAAGCTATCCTTCCATAT GCTTCCAGTGGACAACAAACAAGGGCATTTAGCGAGGCTGTAGATCAATATTCCCAGCTAGGGCTGCGTACATTATCCGTGGCATGGCGAGAACTTAAAG AAGATGAATATCAGGAGTGGTCATCGATGTTCAGAGAGGCGAGTAGCACACTGGTTGATAGGGAGTGGAGAATAGCTGAGGTGTGCCAGAGGTTGGAGCA TGATCTTGAAATTCTAGGAGTTACAGCAATAGAGGATCGTCTTCAGGATGGTGTACCAGAAACAATCGAGACACTTCGAAGAGCCGGAATAAATTTCTGG ATGTTAACTGGAGACAAGCAGAATACAGCAATTCAAATTGCTCTGTCTTGCAATTTTATATCTCCAGAACCGAAGGGCCAGCTTCTTTTGATTGATGGGA AAACTGAGGATGAAGTCTGTAGAAGCTTGGAGAGAGTGTTGCTTACTATGAGAATAACGACTTCAGAGCCAAAGGATGTAGCATTTGTGGTCGATGGTTG GGCTCTTGAGATTGCTCTAAAACATCATCAAAAAGATTTTACCGAATTGGCAATTTTGTCCAGGACTGCTATTTGTTGCCGTGTGACCCCATCGCAGAAA GCGCAGCTAGTGGAACTGTTGAAATCATGTGATTATAGAACGCTCGCAATTGGCGACGGTGGAAATGATGTGAGGATGATACAACAAGCCGATATTGGTG TTGGCATAAGTGGAAGAGAAGGACTTCAGGCAGCAAGAGCAGCTGACTACAGCATTGGGAGTGTTTCCGGGACCAGTCTCTTTAACTCCGTTAGCTTGAT GGCCTATAACGTGTTCTACACTAGCATACCTGTTCTCGCTAGCGTCCTCGACAAAGATCTTAATGAAAAAACTGTAATGCAGCATCCTCAAATCCTATTC TATTGCCAAGCAGGAAGGCTTCTTAATCCTAGCACATTCGCTGGATGGTTCGGCCGGTCCCTTTTCCACGCAATTGTAGTATTCATAATCAGCATAAACG CGTTTGCATACGAGAAGAGTGAAATGGAGGAAGTTGCGATGGTTGCTCTCTCTGGTTGCATATGGTTGCAGGCGTTTGTTGTAGCAATAGAGACAAACTC CTTCACGGTATTACAACACCTTGCAATCTGGGGAAACTTGATTGCATTCTACATCATCAACTGGATCGTCAGTTGTATTCCGTCTTCAGGGATGTACACA ATCATGTTCCGGCTGTGTAGCCAGCCATCTTACTGGATCACAATCTTCCTGATAGTTGGAGCAGGGATGGGGCCAATCCTCGCCATAAAATACTTCCGTT ACACATACAGACCAAGTAAAATCAACACCCTCCAACAAGCAGAACGTCTAGGCGGACCGATACTGTCCTTAGGCAGCATCGACCCGCAGCAAAGATTGAT GGAGAAAGAAGTCTCGGCACTGTCGATAACTCAGCCTAAGAGCAGGAGTTCTTCAGTCTACGAACCACTTCTGTCGGAATCCCCCACCACAAGGAGGTCC ATCGGAGGATCGTCGGCTCCAGCACCATTTGATTTCTTTCAGTCCCAGTCCAGATTGTCTTCCAGCTACTCTAGAAACTGCAAGGACAATTGA
AA sequence Show only first row Show all	>Lus10039855 pacid=23165384 polypeptide=Lus10039855 locus=Lus10039855.g ID=Lus10039855.BGIv1.0 annot-version=v1.0 MSPGVFLPGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVVVLGIAGNVWKDTEARKQWYVQYPKEGPWYELLIIPLRFELLCSIMIPISIKV SLDLVKSLYAKFIDWDVEMFDPETGSSSHATNTAISEDLGQVEYIMTDKTGTLTENKMVFRRCCINGIFYGNESGDALKDTRLLNAVAGGSPDVIRFLTV MAICNTVIPVQSKSGNILYKAQSQDEEALVKAAAKLHMVFFSKSGNLLEIRFNGSVINYEVLDTLEFTSDRKRMSVVVRDARNGKIYLLSKGADEAILPY ASSGQQTRAFSEAVDQYSQLGLRTLSVAWRELKEDEYQEWSSMFREASSTLVDREWRIAEVCQRLEHDLEILGVTAIEDRLQDGVPETIETLRRAGINFW MLTGDKQNTAIQIALSCNFISPEPKGQLLLIDGKTEDEVCRSLERVLLTMRITTSEPKDVAFVVDGWALEIALKHHQKDFTELAILSRTAICCRVTPSQK AQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSIPVLASVLDKDLNEKTVMQHPQILF YCQAGRLLNPSTFAGWFGRSLFHAIVVFIISINAFAYEKSEMEEVAMVALSGCIWLQAFVVAIETNSFTVLQHLAIWGNLIAFYIINWIVSCIPSSGMYT IMFRLCSQPSYWITIFLIVGAGMGPILAIKYFRYTYRPSKINTLQQAERLGGPILSLGSIDPQQRLMEKEVSALSITQPKSRSSSVYEPLLSESPTTRRS IGGSSAPAPFDFFQSQSRLSSSYSRNCKDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	1.4	0.8757
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	2.8	0.8496
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	3.0	0.8814
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	5.5	0.8586
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	6.3	0.8494
AT3G57890			Tubulin binding cofactor C dom...		Lus10021031 [exp]	8.1	0.8414
AT1G15780			unknown protein		Lus10015323 [exp]	11.3	0.7933
AT3G47570			Leucine-rich repeat protein ki...		Lus10030638 [exp]	11.7	0.7658
AT3G58580			DNAse I-like superfamily prote...		Lus10015981 [exp]	14.5	0.8190
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	16.4	0.8008

Compare expression of checked genes

Lus10039855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.