Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 155 / 4e-44 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT2G35615 137 / 2e-37 Eukaryotic aspartyl protease family protein (.1) AT1G64830 132 / 9e-36 Eukaryotic aspartyl protease family protein (.1) AT1G31450 119 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT2G28010 117 / 3e-30 Eukaryotic aspartyl protease family protein (.1) AT2G28030 110 / 1e-27 Eukaryotic aspartyl protease family protein (.1) AT2G28040 106 / 4e-26 Eukaryotic aspartyl protease family protein (.1) AT2G28220 99 / 5e-23 Eukaryotic aspartyl protease family protein (.1) AT2G03200 94 / 9e-22 Eukaryotic aspartyl protease family protein (.1) AT1G25510 88 / 2e-19 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029913 [exp] 346 / 4e-118 AT5G33340 291 / 2e-94 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039839 [exp] 310 / 3e-104 AT5G33340 294 / 2e-95 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003279 [exp] 285 / 4e-94 AT5G33340 296 / 2e-96 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10039792 [exp] 274 / 2e-90 AT5G33340 228 / 2e-70 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10003280 [exp] 255 / 1e-82 AT2G35615 314 / 1e-103 Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 219 / 2e-68 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 208 / 3e-64 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 208 / 5e-64 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 207 / 8e-64 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 173 / 7e-51 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 138 / 9e-38 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 120 / 3e-31 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 107 / 2e-26 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 101 / 3e-24 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 90 / 3e-20 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 87 / 5e-19 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 86 / 1e-18 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 83 / 8e-18 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 81 / 5e-17 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039858 pacid=23165094 polypeptide=Lus10039858 locus=Lus10039858.g ID=Lus10039858.BGIv1.0 annot-version=v1.0 ATGTCATGTCCATCGAGTGTTTGCGATGATCTTCGTTCCGAAGGAAGCTTCTGCGCCCCTATCAACGACAATGTTTGCCATTACAAAATTACATACCTCG ACCAGTCCCACACGCTTGGCGACTTTGCATTCGAGATTCTGACTCTGGGATCGACGCCCGCTCCAGGATCCAGCGTTCAGGTACAAAATACTCTCATCGG GCGTAGCTACAATACATTATTTCCGAACCCATCAACGAGCTTCGACATCATTGGGCTTGGACGTGGGCCTGCTTCACTCATCATGCAACTCGACTCCTTT ATTGATTGGAGATTCTCTTATTGCTTGTCGCGTTCAGACAGGGAGAGTACGATTGATTTCAGCCGAAATGTTATGGGCGACGGTGTTGTTTCAACTCCCT TGATCAATGATCCGTCATTCTTCTTGCTTAGGTTGGAAGCTATGAGTGTGGGGAATGTTCGAATACCATTTCGAGGCTCCGCCGGTGGAGATCAGACCAT CACCATCGATTTTGATACGGTATATACGACCCTTCCCACCAAGTTCTTCTCCAAACTGTCACCTAAGGTGGCAAGACAGATCGTCGGAAGAAAGAGAGTG GGTAGCCCACTCTTCAACCTCTGCTACGAGGCGGGTCCAACAACTAGTCCTATCAATGCTCTTCCCATCATCATGAATTTCCTTGGTGCGGATGTGGTGC TACCTTTGTCCAACGTTTTCATCCAGATCGGCAATACGGGTGATGTGTTTTTTTTCCTCCCAACTGACGATGACATCTCGATTTACGACAATTTAGCGCA GATTAACTTTCTCATTAATTACGAACTTCAAAATACTGTTCTGTCTTTTAAGCCATTGTAA
AA sequence Show only first row Show all	>Lus10039858 pacid=23165094 polypeptide=Lus10039858 locus=Lus10039858.g ID=Lus10039858.BGIv1.0 annot-version=v1.0 MSCPSSVCDDLRSEGSFCAPINDNVCHYKITYLDQSHTLGDFAFEILTLGSTPAPGSSVQVQNTLIGRSYNTLFPNPSTSFDIIGLGRGPASLIMQLDSF IDWRFSYCLSRSDRESTIDFSRNVMGDGVVSTPLINDPSFFLLRLEAMSVGNVRIPFRGSAGGDQTITIDFDTVYTTLPTKFFSKLSPKVARQIVGRKRV GSPLFNLCYEAGPTTSPINALPIIMNFLGADVVLPLSNVFIQIGNTGDVFFFLPTDDDISIYDNLAQINFLINYELQNTVLSFKPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039858 [exp]	0	1
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	5.5	0.8328
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	7.7	0.8328
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	9.5	0.8328
					Lus10013260 [exp]	11.0	0.8328
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	12.2	0.8328
AT1G72200			RING/U-box superfamily protein...		Lus10029794 [exp]	12.4	0.7283
					Lus10005297 [exp]	13.4	0.8328
					Lus10006529 [exp]	14.5	0.8328
					Lus10035557 [exp]	15.5	0.8328
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	16.3	0.7723

Compare expression of checked genes

Lus10039858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.