Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55100 270 / 2e-79 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT2G37360 271 / 4e-79 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55130 267 / 6e-78 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55090 267 / 7e-78 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 265 / 4e-77 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55110 261 / 5e-76 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G53510 258 / 2e-74 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT5G13580 249 / 3e-71 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT5G06530 182 / 4e-48 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT1G31770 180 / 2e-47 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018624 [exp] 1541 / 0 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 471 / 7e-156 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 454 / 4e-149 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10004274 [exp] 307 / 1e-92 AT2G37360 296 / 2e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10019238 [exp] 306 / 2e-92 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 264 / 2e-76 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 256 / 2e-73 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 188 / 1e-52 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 173 / 6e-47 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045100 [exp] 1070 / 0 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 1065 / 0 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.007G004800 [exp] 548 / 0 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 274 / 2e-80 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 267 / 1e-77 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 266 / 3e-77 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 263 / 2e-76 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 263 / 3e-76 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 184 / 7e-49 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.004G236500 [exp] 181 / 8e-48 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10039859 pacid=23165282 polypeptide=Lus10039859 locus=Lus10039859.g ID=Lus10039859.BGIv1.0 annot-version=v1.0 ATGGCACCGCCAAGGTCGAGCCAAACGGGAAAGAATGGCAGCCTCGAGAGCCTGCTGGACATGGACGAAACGGCCCTGAGAAGGAAAAACAACAACGGGC CCGGGACGAACCATCTGAAGATGAACCAGACGGTTCATCCCGGGACGGGGCTGGTGTTCAAGGACCTGTCATACAGTGTAATGAAGAAGCAGAAGAAAGA CGGCGAATGGATCACTAAAGAAGCTTACTTGCTCAATGAAATCTCTGGACATGCTGCCAAAGGAGAGATCATGGCTATTATGGGTCCGAGTGGAGCTGGA AAATCGACTTTCCTTGATGCGCTCGCTGGCCGGATCGCTCAGGGAAGCCTCGAGGGCTCTGTCCGGATCGATGGAAAGCCGGTGACTACCAGCTACATGA AGATGATATCTTCTTATGTAATGCAAGACGATCAGCTCTTCCCTATGCTTACCGTCTTCGAAACGTTCATGTTCGCTGCGGAGGTCAGGCTTCCTCCCTC AATCTCGAGGGCCGAGAAGAAGAAACGAGTTCATGAACTTCTCGACCAACTCGGCCTAACGAGTGCAACGCATACTTATATTGGGGATGAAGGCAGGAGG GGAGTCTCGGGTGGAGAACGACGAAGAGTATCAATCGGAGTCGACATCATCCACAAGCCGCCTCTTCTGTTTCTCGACGAACCAACTTCGGGGCTGGACT CGACCAGCGCTTACAGCGTGGTCGAAAAGGTCAAAGACATTGCCCGCGGAGGGAGCATAGTGTTGATGACCATTCATCAACCTTCTTTCAGAATCCAGCT CCTATTAGATCGTATCACCATGCTCGCCAGGGGAAGGCTGGTGTACATGGGAAGTCCAGGGGAACTACCTGCATACCTGTCAGGATTCGGCCGACAAGTC CCTGATGGCGAAAACAGCATCGAGTATCTCATCGACGTGATCAAGGAGTACGACGAATCGACAATCGGATTAGATCCTCTGGTGATGTACCAGAGAGAAG GAATCAAGCCTGATCAAGTAGCCATGACTCCTATCCCTAAGCCACCAAAAACCCCCAGAACTCCTTACAGGAGCAAACAGAGCATTTCTGGACTCAGAGT TTCCATCCCACTCCAGAGTCACCATTTCTCATCCTCCGCTACACCTCGAGCTGATCGCTCAGCTCAATTCGACTACGAGGAAGATGATGACGACGATGAT GAAGATTTCGACAACTCACTGGATCGGAGCAAGGCTGCTATGAAGATTAACACACCAATGCCTCACTATATGCAGAGTGGAAACCATCCTCGCTTAGCTT CCCATTTCTACAAAGACTTCTCTGTTTGGCTCTACCATGGCTTCACTGGTACGCCCCGCCGAGCTCCTTCCTGGACTCCAGCAAGAACCCCCGGCGGGAT GAAAACCCCAATCTCCGCCGCTAGAAGCAGAGCTTCCAGCAAATACCCCACCCCTCAACGAAACACTAACCCTAACATCAATTACCCTACCAAAACCCCA ATCCAATCATCTCCCTCTCCCTACCAATCCTTCTCAGAAACAATCGACGAAGAAGAATACTCCGAATCAACACCGCTGGACGATCTAGACCATCACGGCC CGAAATTCGCGAATCCATGGATCCGCGAAGTCGGAGTCCTCTGCTGGCGGACCGCTCTAAACGTGGTCCGCACACCAGAGCTCTTCCTATCTCGAGAGAT CGTCCTCGTCGTAATGGCGCTAATCCTCTCCTCCCTATTCAAAAACCTCGCCGACGATTCCTTCAAAACAATCAACCACATCCTCAATTTCTACATCTTC GCAGTCTGCCTCGTCTTCTTCTCATCTAACGACGCAGTCCCGACCTTCATCCAAGAGCGATTCATCTTCATCCGCGAGACCTCACACAACGCCTACCGCG CATCCTCCTACGTCGTCTCCACACTAATCGTCTACCTCCCTTTCTTCGCCGTGCAAGGATTCTCCTTCGCCGCCATTACCAAATTCAGCCTCCACCTCAA GAGCAGTCTCTTCAACTTCTGGATGATTTTGTTTTCGTCCTTGATCACCACCAACGCTTACGTCATGTTAGTAAGCGCTCTTGTCCCGAGCTACATCACC GGGTACGCGGTCGTGATCGCGACCACAGCGTTGTTCTTCCTGACGTGTGGATTCTTCCTGAAGCGGACGAGTATTCCGATCTGGTGGAGGTGGTTGCATT ACATCTCGGCCATTAAGTACCCATTCGAGGCGATGCTGACGAATGAGTTCAAAGGCGATAGGTGTTATAACGGGACGTTTTCGGATTTGTCGCCTGGACC GATGGGGGAGGTGAAGCCCAGTGATCTACATGTAAGGTTGATTGGGGAAGGGAATCCGGCAGGGTTGTGTCCGTTGATCGGAGAGGATGTTATGTCGTCG ATGGACATTACGGTGGATAATCTGTGGTATGATATCGCGATCTTGCTTGCTTGGGGTGTTCTTTACAGATTGTTTCTGTATGTTGTGCTCCGATTCTACT CCAAGAACGTCAGGAAATGA
AA sequence Show only first row Show all	>Lus10039859 pacid=23165282 polypeptide=Lus10039859 locus=Lus10039859.g ID=Lus10039859.BGIv1.0 annot-version=v1.0 MAPPRSSQTGKNGSLESLLDMDETALRRKNNNGPGTNHLKMNQTVHPGTGLVFKDLSYSVMKKQKKDGEWITKEAYLLNEISGHAAKGEIMAIMGPSGAG KSTFLDALAGRIAQGSLEGSVRIDGKPVTTSYMKMISSYVMQDDQLFPMLTVFETFMFAAEVRLPPSISRAEKKKRVHELLDQLGLTSATHTYIGDEGRR GVSGGERRRVSIGVDIIHKPPLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIVLMTIHQPSFRIQLLLDRITMLARGRLVYMGSPGELPAYLSGFGRQV PDGENSIEYLIDVIKEYDESTIGLDPLVMYQREGIKPDQVAMTPIPKPPKTPRTPYRSKQSISGLRVSIPLQSHHFSSSATPRADRSAQFDYEEDDDDDD EDFDNSLDRSKAAMKINTPMPHYMQSGNHPRLASHFYKDFSVWLYHGFTGTPRRAPSWTPARTPGGMKTPISAARSRASSKYPTPQRNTNPNINYPTKTP IQSSPSPYQSFSETIDEEEYSESTPLDDLDHHGPKFANPWIREVGVLCWRTALNVVRTPELFLSREIVLVVMALILSSLFKNLADDSFKTINHILNFYIF AVCLVFFSSNDAVPTFIQERFIFIRETSHNAYRASSYVVSTLIVYLPFFAVQGFSFAAITKFSLHLKSSLFNFWMILFSSLITTNAYVMLVSALVPSYIT GYAVVIATTALFFLTCGFFLKRTSIPIWWRWLHYISAIKYPFEAMLTNEFKGDRCYNGTFSDLSPGPMGEVKPSDLHVRLIGEGNPAGLCPLIGEDVMSS MDITVDNLWYDIAILLAWGVLYRLFLYVVLRFYSKNVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	3.0	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	4.2	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	5.2	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	6.0	1.0000
AT3G47040			Glycosyl hydrolase family prot...		Lus10000391 [exp]	6.0	0.9483
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	6.7	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	7.3	1.0000
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	7.9	1.0000
					Lus10026426 [exp]	8.2	0.9602
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	8.9	1.0000

Compare expression of checked genes

Lus10039859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.