Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06130 467 / 9e-167 GLX2-4 glyoxalase 2-4 (.1.2) AT2G31350 466 / 3e-166 GLX2-5 glyoxalase 2-5 (.1.2) AT2G43430 438 / 4e-155 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2) AT3G10850 201 / 5e-63 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT1G53580 64 / 2e-11 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT1G25375 41 / 0.0008 Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018625 [exp] 550 / 0 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2) Lus10017706 [exp] 548 / 0 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 482 / 3e-173 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10034259 [exp] 198 / 4e-62 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 198 / 4e-62 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029004 [exp] 189 / 2e-58 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10020760 [exp] 66 / 8e-12 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 53 / 9e-08 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G026500 [exp] 531 / 0 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 501 / 5e-180 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2) Potri.019G062600 [exp] 190 / 6e-59 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.005G204800 [exp] 69 / 6e-13 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.001G380100 [exp] 66 / 6e-12 AT1G53580 407 / 2e-144 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [flax] [poplar] Metallo-HOrase PF00753 [flax] [poplar] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Lus10039860 pacid=23165213 polypeptide=Lus10039860 locus=Lus10039860.g ID=Lus10039860.BGIv1.0 annot-version=v1.0 ATGCAAATGATCTCTAAGGCTTCCTGCGCCATGGCTTCCCTCTCTTCTTGCACTAGGGCAAGGAGTGCGGGGTCCGTGTGGCCAGGTGCTCGGCCACTCA GCGCGCGGAAGACCCTCTTGTGTGGATTCATGTGGCTGATGTCAACCCCGTTTAAGACCTTGCGCTGTGCTAGCCGCACGATTAAGGTGTCTCAGTTCTG TAGTGTGGCATCAAGTGTTTCATCCTCATTGCAGATTGAATTGGTGCCATGTCTGATGGACAACTATGCTTATCTGTTACACGATGCTGACACCGGCACT GTAGGGGTTGTTGATCCATCAGAGTCAGTACCGGTTATAGATGCTTTAAGTAAGAAAGATCGAAACTTGACGTATATACTGAACACCCATCACCATTATG ATCATACGGGTGGGAATGAAGAGTTGAAAGCAAGGTATGGTGCAAAGGTAATCGGTTCAGGAGTTGACAGGGAGAGGATTCCTGGCATTGACATGGTACT GAATGATGGTGATAAGTGGATGTTTGGCAGTCATGAGGCCGTAGTCTTTGAAACTCCTGGCCACACCCGAGGTCACATTAGCTTCTACTTCCCAGGATCG GCTGCAATCTTCACAGGAGACACTCTATTCAGCTTGTCGTGCGGCAAACTCTTTGAAGGAGAACCTGAAGAGATGCATGCTTCCCTTCAAAAGATCACTT CTTTACCGGACGAAACAAAGATCTTCTGCGGCCATGAGTACACCTTGAGTAACTCAAAGTTCGCCATGTCCATCGAGCCCAACAACGAGTCGCTCGAGTC ATACACAGCTGAAGTAGCGCACCTTCGCAGCAAGAGCTTGCCAACGATTCCGACGACTCTCAAAATTGAGAAGGCTTGCAACCCTTTCCTACGGACCTCG AGTGCAGAGATCCGTCGAATGTTGAAGATTCCCGAGACGGCTAGCGATTCGGAAGCGTTGGGAGTCATCCGTCGTGCCAAAGACAGTTTTTGA
AA sequence Show only first row Show all	>Lus10039860 pacid=23165213 polypeptide=Lus10039860 locus=Lus10039860.g ID=Lus10039860.BGIv1.0 annot-version=v1.0 MQMISKASCAMASLSSCTRARSAGSVWPGARPLSARKTLLCGFMWLMSTPFKTLRCASRTIKVSQFCSVASSVSSSLQIELVPCLMDNYAYLLHDADTGT VGVVDPSESVPVIDALSKKDRNLTYILNTHHHYDHTGGNEELKARYGAKVIGSGVDRERIPGIDMVLNDGDKWMFGSHEAVVFETPGHTRGHISFYFPGS AAIFTGDTLFSLSCGKLFEGEPEEMHASLQKITSLPDETKIFCGHEYTLSNSKFAMSIEPNNESLESYTAEVAHLRSKSLPTIPTTLKIEKACNPFLRTS SAEIRRMLKIPETASDSEALGVIRRAKDSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	0	1
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	1.4	0.8804
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	4.6	0.8837
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	6.5	0.8668
					Lus10030151 [exp]	7.7	0.8668
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	10.9	0.8370
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	11.5	0.8573
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	13.8	0.8496
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	14.0	0.8425
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	16.0	0.8586
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	16.1	0.8567

Compare expression of checked genes

Lus10039860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.