Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20610 505 / 6e-178 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G53970 498 / 3e-176 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 496 / 5e-175 Tyrosine transaminase family protein (.1) AT4G28420 484 / 3e-170 Tyrosine transaminase family protein (.1.2) AT4G28410 475 / 2e-166 Tyrosine transaminase family protein (.1) AT2G24850 399 / 8e-137 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 387 / 4e-132 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 373 / 1e-126 Tyrosine transaminase family protein (.1) AT1G77670 110 / 3e-26 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 96 / 3e-21 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018626 [exp] 800 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017704 [exp] 642 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033661 [exp] 635 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 624 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033659 [exp] 545 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 545 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10017934 [exp] 526 / 0 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 505 / 4e-174 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10033660 [exp] 476 / 9e-169 AT5G53970 408 / 3e-142 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014100 [exp] 633 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 622 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 615 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 613 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 593 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 523 / 0 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137900 [exp] 506 / 5e-179 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 246 / 2e-80 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G088426 [exp] 110 / 4e-26 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 110 / 4e-26 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10039861 pacid=23165077 polypeptide=Lus10039861 locus=Lus10039861.g ID=Lus10039861.BGIv1.0 annot-version=v1.0 ATGGGGGAAGAGAGTTTCGCGACGGAGAACGGCAATGGCGGCGGGAAGAAGAAATGGGGGTTCAAGGCGAACAGCGGGCTCATTGCGGCTTCTGAAATCA CAGTCCGTGGAGTTCTCAACATTTTGTATTCAAAACTGAATGGAGAGGATAAACGACCTGTCGTACCGCTCGGCCATGGCGATCCGTCTGCTTTCCCCTG TTTCAGGACCAGTGTCGATGCAGAGGATGCTGTGGTTGATTCTTTGAGATCTGGGAAGTTCAATCATTACTCCCCCACTGTTGGTGTTCTCCCTGCTCGA AGGGCTATTGCAGAATACCTTAATGAGAATCTCCCAAACAAGCTATCCTCAGATGACGTCTTCCTCACAATCGGATGCACTCAAGCAATCGAAACCGCAC TAACGGTTCTCGCTCTACCAGGTGCGAACATCCTGCTTCCAAGGCCGGGGTTCCCTTACTACGAAGCTCGAGCTGCAGTGTCTGGACTCGAAGTCCGACA CTTTGATCTACTTCCTGAAAAGGGCTGGGAGGTGGATCTCGAAGCTGTCGAATCTCTAGCAGATTCGAACACAGTCGCCATGGTCGTTATAAACCCTGGC AACCCTTGTGGATGCGTCTACAGTTACCAACATTTGAAGAGAGTTGCTGAGACGGCCGAAAAGCTGGGAATACTGGTGATTTCAGATGAAGTGTACGCCC ATCTCGATTTTGGAAGTAACCGATTTGTTCCGATGGGTGTGTTCGGATCGGTTGTGCCGGTTTTGACGCTTGGATCAATTTCGAAGAGATGGATTGTTCC TGGCTGGCGGCTTGGCTGGCTTGTTATGAGTGATCCGAATGCTATCCTGGTTGAAACAGGGATGGTTGAGTCGATCAAGGGCTGCCTCGACATCTCGTCC GATCCTGCAACTTTCATTCAGGGCGGAGTGGAACGACTGATCAGAAACACGAAGGACGAGTTCTTCTCGAGAATCAAGACCTTGTTGAAGGAGGCTGCAG ATTCGTGCTTCGACAGGATGAAGGACATTCCTTACGTTACCTGTCCGATGAAACCTGAGGGTTCAATGTTTGTCATGGTGAAGCTGAACTTGGAATCACT GGAAGACATTGACGACGACATGGATTTCTGCATCAAGCTGGCTAGAGAGGAATCCGTGATCGTCCTACCAGGAATGGCAGTAGGGCTGAAGAACTGGCTT CGTGTTACTTTCGCAGTAGAACCGTCTGCTCTCGAAGACGGGCTCGATAGGATAAAAGCATTCTGCCACAGGCATTCCAAGAAGAAGGCGTAG
AA sequence Show only first row Show all	>Lus10039861 pacid=23165077 polypeptide=Lus10039861 locus=Lus10039861.g ID=Lus10039861.BGIv1.0 annot-version=v1.0 MGEESFATENGNGGGKKKWGFKANSGLIAASEITVRGVLNILYSKLNGEDKRPVVPLGHGDPSAFPCFRTSVDAEDAVVDSLRSGKFNHYSPTVGVLPAR RAIAEYLNENLPNKLSSDDVFLTIGCTQAIETALTVLALPGANILLPRPGFPYYEARAAVSGLEVRHFDLLPEKGWEVDLEAVESLADSNTVAMVVINPG NPCGCVYSYQHLKRVAETAEKLGILVISDEVYAHLDFGSNRFVPMGVFGSVVPVLTLGSISKRWIVPGWRLGWLVMSDPNAILVETGMVESIKGCLDISS DPATFIQGGVERLIRNTKDEFFSRIKTLLKEAADSCFDRMKDIPYVTCPMKPEGSMFVMVKLNLESLEDIDDDMDFCIKLAREESVIVLPGMAVGLKNWL RVTFAVEPSALEDGLDRIKAFCHRHSKKKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	0	1
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	4.5	0.7709
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	5.7	0.8017
AT4G14930			Survival protein SurE-like pho...		Lus10004909 [exp]	6.5	0.8197
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	6.5	0.8052
AT1G03905		ABCI19	ATP-binding cassette I19, P-lo...		Lus10024914 [exp]	20.8	0.7442
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	21.7	0.7697
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	23.8	0.7220
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	31.0	0.7811
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	32.6	0.7858
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	36.4	0.7497

Compare expression of checked genes

Lus10039861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.