Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70870 40 / 8e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70840 40 / 0.0002 MLP31 MLP-like protein 31 (.1) AT1G70850 39 / 0.0005 MLP34 MLP-like protein 34 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039864 [exp] 194 / 4e-63 AT5G54160 65 / 7e-12 O-methyltransferase 1 (.1) Lus10002175 [exp] 163 / 2e-52 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002174 [exp] 152 / 6e-48 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039891 [exp] 149 / 1e-46 AT5G28010 59 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10018627 [exp] 138 / 2e-43 ND / Lus10002176 [exp] 87 / 2e-22 AT1G24020 65 / 7e-14 MLP-like protein 423 (.1.2) Lus10039892 [exp] 64 / 5e-14 ND 41 / 9e-06 Lus10030840 [exp] 52 / 1e-08 AT1G24020 189 / 2e-62 MLP-like protein 423 (.1.2) Lus10028887 [exp] 47 / 4e-07 AT2G01520 129 / 1e-38 \(Zusammen-CA\)-enhanced 1, MLP-like protein 328 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G020000 [exp] 49 / 1e-07 AT1G70880 69 / 3e-15 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.017G051100 [exp] 44 / 4e-06 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.017G051200 [exp] 42 / 1e-05 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.008G131200 [exp] 41 / 5e-05 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.004G020100 [exp] 41 / 5e-05 AT1G70880 58 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10039863 pacid=23165291 polypeptide=Lus10039863 locus=Lus10039863.g ID=Lus10039863.BGIv1.0 annot-version=v1.0 ATGGCGGCTAGGATTCACAAGTTTGAGGCTAAGTTTCCGATGAAATCTCCTGAGAAGCTGGTTGGTTTCTTCAGGAACCATTTCTGCGACCTGCCTCAAC TGGTTCCGGCTATGATCAAGACCTCCAAGATTATCGGCGGAGGGTCGAAGATGGGTCCTGGCTCCGTCTTCCACGTCACTTACTCCCTCCCTGGAATTCC GAGCCTAGTGAGTATAAAGATGAAGGTGGAAGAGATGGACGACGAAGCTGCGGGAAGCAAGTTGATGACGCTCAGGACGATCGAATGGGACTTGATGCAT AAATACCCTAGTTACGTTGCCAGAGCTGAGATCGATGCCGGCGGCAAGCATGTTAAATGGTCGGTCGAGTACGAGAAGGCCGATCCGAGCGTTCCTGCTC CTCTCGAATACATCGAGCTTTACAAAATCATGTGCAGCGGCTCCAACCATTATTAA
AA sequence Show only first row Show all	>Lus10039863 pacid=23165291 polypeptide=Lus10039863 locus=Lus10039863.g ID=Lus10039863.BGIv1.0 annot-version=v1.0 MAARIHKFEAKFPMKSPEKLVGFFRNHFCDLPQLVPAMIKTSKIIGGGSKMGPGSVFHVTYSLPGIPSLVSIKMKVEEMDDEAAGSKLMTLRTIEWDLMH KYPSYVARAEIDAGGKHVKWSVEYEKADPSVPAPLEYIELYKIMCSGSNHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10039863 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	8.6	0.9965
					Lus10011425 [exp]	12.2	0.9965
AT1G29010			unknown protein		Lus10013977 [exp]	12.8	0.9525
					Lus10011078 [exp]	14.9	0.9965
					Lus10022518 [exp]	17.2	0.9965
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	17.7	0.9852
AT4G18840			Pentatricopeptide repeat (PPR-...		Lus10036420 [exp]	18.4	0.8803
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023431 [exp]	19.2	0.9965
AT3G15670			Late embryogenesis abundant pr...		Lus10004395 [exp]	19.9	0.9635
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	21.1	0.9965

Compare expression of checked genes

Lus10039863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.