Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 65 / 4e-12 ATOMT1 O-methyltransferase 1 (.1) AT4G35150 48 / 3e-06 O-methyltransferase family protein (.1) AT1G77530 44 / 5e-05 O-methyltransferase family protein (.1) AT4G35160 44 / 6e-05 O-methyltransferase family protein (.1) AT5G37170 42 / 0.0001 O-methyltransferase family protein (.1) AT1G70870 41 / 0.0002 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G53810 41 / 0.0005 O-methyltransferase family protein (.1) AT1G70840 40 / 0.0005 MLP31 MLP-like protein 31 (.1) AT1G23120 40 / 0.0006 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039863 [exp] 194 / 6e-63 AT5G28010 42 / 3e-05 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10018628 [exp] 167 / 1e-49 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10002175 [exp] 144 / 2e-43 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10002174 [exp] 135 / 8e-40 AT5G28010 50 / 4e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10039891 [exp] 134 / 3e-39 AT5G28010 59 / 3e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10018627 [exp] 125 / 1e-36 ND / Lus10018629 [exp] 116 / 2e-30 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10001510 [exp] 112 / 6e-29 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10033656 [exp] 103 / 1e-25 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121800 [exp] 110 / 1e-28 AT4G35160 158 / 7e-46 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 110 / 3e-28 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 109 / 8e-28 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 106 / 7e-27 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 106 / 1e-26 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 105 / 2e-26 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 104 / 6e-26 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 103 / 1e-25 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 99 / 4e-24 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 89 / 2e-20 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10039864 pacid=23165048 polypeptide=Lus10039864 locus=Lus10039864.g ID=Lus10039864.BGIv1.0 annot-version=v1.0 ATGCTTTGGGAGCATTTGGCGGTGGACCCCGCGCTGTCTGACGTGTTCAATGACGCGATGACCGGAGATAGCTCCGTGGTTGGGGAGGTGCTGGTGAAGG AAGCAAAGTCGTTCTTCGAAGGCGTGGGGTCCCTTGTCGACATGGCGGGTGGGATCGGGAATATGACCAAAGCCATTGTTATGTCGTTTTTGAAGATGGA TTGTACCATTCTGGATCTGTCACATTGTCGTTTGGAGATTGGAAGATTGTGGAACTTGAAGTATGTTGTTGGTGATATGTTCGTTGCTGTCCCTCCTGCC GACGTCGTTTTGTTCGAGCTGATTTCAGTCATGGCGGCTCAGATTCACAAGCTTGAGGCTAAGTTTGCAATGAAATCACCCGAGAAGCTGGTGGGTTTCT TCAGGGACCATATCCTCGACCTGCCTAAACTGGCTCCTGCCATGGTAAGGACCTCCGATGTTGTTGGCGGAGGGTTTAGAATGGGTCCTGGCTCCGTCTT CCACATAAAGGTGGAAGAAATGGACGAAGAAGCTGCCGGAAGTAAAACGATGACGTTGAGGGTGATCGAAGGCGAGTTGTTGCAGAAATACCCTACTTAC GTTGCCAAAGCTGAGATTGATGCCGACGGTGTGCATGTTAATTGGTCGGTCGAGTACGAGAAGGCCGATCCGAGCATCCCCGCTCCCCTCGAATACAATC GAGCTTTACAAAATCATGTGCAGCGGCTCCGACCATCATTACTGATCTATGATCAATCAGAATAA
AA sequence Show only first row Show all	>Lus10039864 pacid=23165048 polypeptide=Lus10039864 locus=Lus10039864.g ID=Lus10039864.BGIv1.0 annot-version=v1.0 MLWEHLAVDPALSDVFNDAMTGDSSVVGEVLVKEAKSFFEGVGSLVDMAGGIGNMTKAIVMSFLKMDCTILDLSHCRLEIGRLWNLKYVVGDMFVAVPPA DVVLFELISVMAAQIHKLEAKFAMKSPEKLVGFFRDHILDLPKLAPAMVRTSDVVGGGFRMGPGSVFHIKVEEMDEEAAGSKTMTLRVIEGELLQKYPTY VAKAEIDADGVHVNWSVEYEKADPSIPAPLEYNRALQNHVQRLRPSLLIYDQSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	0	1
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	1.7	0.9492
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	3.9	0.9363
AT1G75720			Plant protein of unknown funct...		Lus10036971 [exp]	4.6	0.9426
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	4.9	0.9480
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	5.3	0.9417
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10024435 [exp]	6.5	0.9066
AT3G44716			unknown protein		Lus10020554 [exp]	6.7	0.9054
					Lus10000650 [exp]	8.5	0.9230
					Lus10041944 [exp]	9.6	0.9187
AT2G36650			unknown protein		Lus10023883 [exp]	10.2	0.9330

Compare expression of checked genes

Lus10039864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.