Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018628 [exp] 98 / 1e-25 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 76 / 1e-17 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10018629 [exp] 74 / 1e-16 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10017691 [exp] 64 / 2e-13 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10033656 [exp] 52 / 4e-09 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10033653 [exp] 52 / 4e-09 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1) Lus10033655 [exp] 51 / 9e-09 AT4G35150 193 / 3e-58 O-methyltransferase family protein (.1) Lus10017699 [exp] 49 / 4e-08 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018526 [exp] 47 / 3e-07 AT4G35160 176 / 1e-51 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093100 [exp] 63 / 4e-13 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G122000 [exp] 58 / 3e-11 AT4G35160 174 / 6e-51 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 58 / 3e-11 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 57 / 9e-11 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 57 / 1e-10 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 56 / 2e-10 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 55 / 3e-10 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 54 / 6e-10 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G120900 [exp] 52 / 1e-09 AT4G35160 75 / 3e-16 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 46 / 4e-07 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039865 pacid=23165168 polypeptide=Lus10039865 locus=Lus10039865.g ID=Lus10039865.BGIv1.0 annot-version=v1.0 ATGGGATCATTAAGCAATAACGTCGCCGGCGGAAGCACAACCTCGTCGGAGCTCCTCGAAGCTCAGAGCCACGTGTGGCATCGCACCTTCAACTTCGTCA CCTCCATGTCACTAAAATGTGTCCAGCTCGGCATCCCTGACGCCGTCAACTCTAACGGCGTTGAAAGTCCCACCGACGAAATCCCCCTACCTCCACCGCC TCCTCCGTGTCCTCGTCCACTCCGGCTTCCTCATCTCCCACAGCGGTGGCGAAAGCTACTCGCTAACACCTGCCGGCAGACTCCTCCTTAA
AA sequence Show only first row Show all	>Lus10039865 pacid=23165168 polypeptide=Lus10039865 locus=Lus10039865.g ID=Lus10039865.BGIv1.0 annot-version=v1.0 MGSLSNNVAGGSTTSSELLEAQSHVWHRTFNFVTSMSLKCVQLGIPDAVNSNGVESPTDEIPLPPPPPPCPRPLRLPHLPQRWRKLLANTCRQTPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039865 [exp]	0	1
AT5G49040			Disease resistance-responsive ...		Lus10021082 [exp]	4.5	0.9327
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	4.5	0.9090
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024626 [exp]	12.2	0.9282
AT5G54010			UDP-Glycosyltransferase superf...		Lus10040178 [exp]	13.0	0.8886
AT5G06490			RING/U-box superfamily protein...		Lus10008972 [exp]	13.7	0.9226
AT1G66470	bHLH	AtRHD6, RHD6, b...	ROOT HAIR DEFECTIVE6 (.1)		Lus10017634 [exp]	23.2	0.8983
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	23.7	0.9058
AT1G77860		KOM	KOMPEITO, Rhomboid-related int...		Lus10028036 [exp]	24.3	0.8616
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	29.5	0.9080
AT3G01516			unknown protein		Lus10014544 [exp]	31.6	0.9027

Compare expression of checked genes

Lus10039865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.