Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09310 192 / 9e-63 Protein of unknown function, DUF538 (.1) AT1G56580 188 / 2e-61 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT5G46230 131 / 4e-39 Protein of unknown function, DUF538 (.1) AT4G24130 113 / 5e-32 Protein of unknown function, DUF538 (.1) AT5G49600 113 / 8e-32 Protein of unknown function, DUF538 (.1) AT1G30020 104 / 2e-28 Protein of unknown function, DUF538 (.1) AT1G02813 45 / 3e-06 Protein of unknown function, DUF538 (.1) AT5G37070 44 / 1e-05 Protein of unknown function, DUF538 (.1) AT3G08890 42 / 6e-05 Protein of unknown function, DUF538 (.1.2) AT5G01610 40 / 0.0004 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018630 [exp] 326 / 3e-115 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 212 / 9e-71 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 212 / 1e-70 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 128 / 8e-38 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 126 / 7e-37 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 112 / 2e-31 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 113 / 1e-30 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 107 / 1e-29 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 104 / 1e-28 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007000 [exp] 208 / 2e-69 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 207 / 6e-69 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 157 / 2e-49 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 132 / 2e-39 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 130 / 1e-38 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 118 / 1e-33 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 89 / 9e-23 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 82 / 7e-20 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 80 / 2e-19 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 47 / 1e-06 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10039866 pacid=23165228 polypeptide=Lus10039866 locus=Lus10039866.g ID=Lus10039866.BGIv1.0 annot-version=v1.0 ATGTCTCTAGTAACAGAAGCCATCCGAGCCAGCGCCACCGAGGTCTACACCGGCGACGAGATGTGCCAAGTCAAATCCAAGGAGCTCCTCAAGGAAATCG AGCTCCCCAACGGCCTCCTCCCCCTACACGACATCGAGGAGTGCGGTATCGTTCGCGAGACCGGGTTCGTGTGGCTGAAGCAGAAGAAGAGCATCACCCA CAAGTTCGACAAGATCGGGAAGCTCGTCAGCTACGCCCCTGAGGTCACGGCCGTGGTCGAGAAGGGCAAGATCAAGAAGCTCACGGGCGTCAAGACCAAG GAGCTTCTCATCTGGGTGTCGCTCTGCGACATTTACACCGCTGACGAAGGGAAAATTACCTTCAAGACCCCCACGGGCCTTTACAGGTCTTTCCCCGCGT CCGCTTTCCAGGTTCCCGAGGAGCCGGTGAAGGAAGCGCGGGGGGGGGAGTGGGGCGGGGGGCGGGGGAGGGAGAGAGGGGCAGGGGGCGAGTGGGGGAG CCTGTGGCGGTTAAGGAAGTGTAAGTTTGGTTGGTTGGGTTATGAGACACAAGTAAAGAAATTATGCCCATCGATCATGCAATACCAATGA
AA sequence Show only first row Show all	>Lus10039866 pacid=23165228 polypeptide=Lus10039866 locus=Lus10039866.g ID=Lus10039866.BGIv1.0 annot-version=v1.0 MSLVTEAIRASATEVYTGDEMCQVKSKELLKEIELPNGLLPLHDIEECGIVRETGFVWLKQKKSITHKFDKIGKLVSYAPEVTAVVEKGKIKKLTGVKTK ELLIWVSLCDIYTADEGKITFKTPTGLYRSFPASAFQVPEEPVKEARGGEWGGGRGRERGAGGEWGSLWRLRKCKFGWLGYETQVKKLCPSIMQYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09310			Protein of unknown function, D...		Lus10039866 [exp]	0	1
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10037598 [exp]	1.0	0.9659
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10008616 [exp]	2.0	0.8992
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10041806 [exp]	2.4	0.9376
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	3.0	0.9211
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	3.2	0.8836
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	8.5	0.8385
AT1G68530		KCS6, CER6, POP...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10034319 [exp]	10.1	0.8770
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10033642 [exp]	11.2	0.8467
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10037367 [exp]	11.7	0.8042
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	13.1	0.8578

Compare expression of checked genes

Lus10039866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.