Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28480 128 / 5e-39 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT1G03850 110 / 4e-32 ATGRXS13 glutaredoxin 13, Glutaredoxin family protein (.1.2) AT4G15700 99 / 1e-27 Thioredoxin superfamily protein (.1) AT4G15690 98 / 1e-27 Thioredoxin superfamily protein (.1) AT4G15670 96 / 7e-27 Thioredoxin superfamily protein (.1) AT4G15680 96 / 1e-26 Thioredoxin superfamily protein (.1) AT5G18600 96 / 1e-26 Thioredoxin superfamily protein (.1) AT4G15660 95 / 2e-26 Thioredoxin superfamily protein (.1) AT5G14070 92 / 1e-24 ROXY2 Thioredoxin superfamily protein (.1) AT3G02000 88 / 2e-23 ROXY1 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018631 [exp] 245 / 3e-85 AT1G28480 127 / 8e-39 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 131 / 1e-40 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10017693 [exp] 126 / 8e-39 AT1G28480 100 / 4e-29 Thioredoxin superfamily protein (.1) Lus10033649 [exp] 125 / 2e-38 AT1G28480 100 / 5e-29 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 108 / 4e-31 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 100 / 5e-28 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 100 / 8e-28 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10038514 [exp] 94 / 2e-25 AT5G14070 122 / 2e-36 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 93 / 5e-25 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017300 [exp] 157 / 3e-50 AT1G28480 132 / 3e-40 Thioredoxin superfamily protein (.1) Potri.007G134800 [exp] 156 / 5e-50 AT1G28480 141 / 9e-44 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 139 / 3e-43 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.011G058800 [exp] 129 / 5e-39 AT1G28480 102 / 2e-28 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 105 / 3e-30 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 105 / 5e-30 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 104 / 7e-30 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 91 / 1e-24 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 86 / 8e-23 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.008G214600 [exp] 86 / 1e-22 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10039867 pacid=23165373 polypeptide=Lus10039867 locus=Lus10039867.g ID=Lus10039867.BGIv1.0 annot-version=v1.0 ATGCAGGAGGCGATTCCCTACAAGTCATGGCAACCGCAATACACAAAGCAGCCGTTTTTAACCACCGGCGGCGAAGTCCTCCTCCCTGCCACGGCGGCTC CGGCGGAGGTCGTGTCGGAGAATGCCATCGTGGTATTCGCCAGGAGAGGGTGCTGCATGACCCACGTCGTCAAGCGGCTGCTCCTCTGTTTAGGGGTCAA CCCACCGGTGTTCGAGGTGGACGATGGCGACGAGGGTCGGGTTTTGAAGGATTTGAAGTTGCCGGCGAAGGTGGCAGTGCAGTTGCCAGCGGTTTTTATT GGTGGGGAATTGTTTGGTGGGTTGGATAAGGTCATGGCCAGTCATATCGCCGGCGAGTTGGTTCCTCTTCTTAAACAAGCAGGAGCCTTGTGGCTTTGA
AA sequence Show only first row Show all	>Lus10039867 pacid=23165373 polypeptide=Lus10039867 locus=Lus10039867.g ID=Lus10039867.BGIv1.0 annot-version=v1.0 MQEAIPYKSWQPQYTKQPFLTTGGEVLLPATAAPAEVVSENAIVVFARRGCCMTHVVKRLLLCLGVNPPVFEVDDGDEGRVLKDLKLPAKVAVQLPAVFI GGELFGGLDKVMASHIAGELVPLLKQAGALWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	1.4	0.9879
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	2.8	0.9861
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10034038 [exp]	3.5	0.9797
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	4.0	0.9877
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	5.2	0.9867
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	5.9	0.9854
AT4G10950			SGNH hydrolase-type esterase s...		Lus10032399 [exp]	6.0	0.9805
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	6.0	0.9850
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	7.0	0.9836
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	7.0	0.9689

Compare expression of checked genes

Lus10039867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.