Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44150 167 / 1e-48 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018632 [exp] 521 / 0 AT5G44150 202 / 6e-62 unknown protein Lus10005598 [exp] 217 / 8e-70 AT5G44150 124 / 2e-34 unknown protein Lus10038027 [exp] 216 / 5e-69 AT5G44150 123 / 2e-33 unknown protein Lus10035461 [exp] 171 / 8e-52 AT5G44150 91 / 1e-23 unknown protein Lus10011074 [exp] 162 / 6e-49 AT5G44150 84 / 1e-19 unknown protein Lus10014193 [exp] 117 / 1e-32 AT5G44150 50 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017200 [exp] 156 / 2e-43 AT5G44150 137 / 2e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039868 pacid=23165234 polypeptide=Lus10039868 locus=Lus10039868.g ID=Lus10039868.BGIv1.0 annot-version=v1.0 ATGGACGCCAAATCACTTGCGAAGTCCAAGCGAGCTCACTCTCTACACCACAACAAGAAGCCACACCCATCTCGTAAACCAACCGGTTCAGCTACCGCAG GCGGTGGAGATGGTGGAATCGCAGGTAAATCGTCCGGAAAGCCGGTTAAGGATCGAAAACAAGCTGCCTCGCTCGCTTTGCCGTCGAATTCCGATCGTTA CGAGGAAGAGTTTGATTCAGATTCGGCGGAAATTTCAGTTAAGACCTCCGATGTAGCGTTGCCGAAGAGCAAAGGTGCAGATTACCGCCATCTGCTTGCT GAAGCTCAATCTCAGCCGATTTCCAGTGGCTTCTTGGACAGCTCGTTTTCCCTGGACGATGTTATGCCTGATGAATTCAGACACTCGTTAGGTCCGATGC TTTCAGCAAGAGGAGAGGGAATCTTGTCATGGATTTTGAATGATAATTTCATTGTGGAAGACGAGATTGGAGCGAATGCTACTCAGGAGGCATCTTTTCT GTCACTCAACTTGCATGCTCTCGAGCAACAACTGGCCAAAGTAGATATATCAAATAGGCTTTTCATCGAACCGGATTTATTACCACCAGACCTGGTTACA CGTAGTCAGGAGGACTCTACATCAATGACTGAAAGTGCTGTTAGTACATCTATGCCTGAACACTCTGCTCACCCCGACATTTCTGATGCTGATGCAATAT TCGATGAACCAACCTCTACAATCGACGACTATTTCAAACCCACCCTCACACAATCTCCAAAATCTGCTAGTAAAGTTAAACCCTTCGAGGCAGCAGCTGC AGAGGCGGAACTGGATATGCTTCTCGATTCCTTCAGTGACACCAAGCTCGTCGAATCTTCCACCTCCACTTCAGGTACTACTTTCCCCTTCTGGCAGGAC TCCAGGATGAATGTACCTTCAGAGTTAGACGACATGCTTGATAATTTACTTCAAGAAACATCCTCTGCATTGAACAACAACAACACTAGGGATGCGAAAT CTCTGTCTCCCGGAGTCGGATCTTCCTCATCTTCTCAGTCTGTCTCGAAGTCCGAGGTTCTCGATGATTTCGGTTCTTGGTTAGACACAATGTGA
AA sequence Show only first row Show all	>Lus10039868 pacid=23165234 polypeptide=Lus10039868 locus=Lus10039868.g ID=Lus10039868.BGIv1.0 annot-version=v1.0 MDAKSLAKSKRAHSLHHNKKPHPSRKPTGSATAGGGDGGIAGKSSGKPVKDRKQAASLALPSNSDRYEEEFDSDSAEISVKTSDVALPKSKGADYRHLLA EAQSQPISSGFLDSSFSLDDVMPDEFRHSLGPMLSARGEGILSWILNDNFIVEDEIGANATQEASFLSLNLHALEQQLAKVDISNRLFIEPDLLPPDLVT RSQEDSTSMTESAVSTSMPEHSAHPDISDADAIFDEPTSTIDDYFKPTLTQSPKSASKVKPFEAAAAEAELDMLLDSFSDTKLVESSTSTSGTTFPFWQD SRMNVPSELDDMLDNLLQETSSALNNNNTRDAKSLSPGVGSSSSSQSVSKSEVLDDFGSWLDTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44150			unknown protein		Lus10039868 [exp]	0	1
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	3.0	0.7629
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	15.6	0.7322
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	17.4	0.7426
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	17.8	0.7344
AT2G20310		RIN13	RPM1 interacting protein 13 (....		Lus10014249 [exp]	18.5	0.6790
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	26.8	0.6940
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	30.1	0.6848
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	30.2	0.6935
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	34.0	0.6634
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	34.7	0.6656

Compare expression of checked genes

Lus10039868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.