Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03840 294 / 2e-98 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 286 / 4e-96 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G66730 272 / 4e-90 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G50700 269 / 2e-89 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 265 / 1e-87 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 265 / 4e-87 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT2G02080 263 / 1e-86 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 262 / 1e-86 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT4G02670 260 / 1e-86 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G45260 256 / 2e-84 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010820 [exp] 271 / 2e-92 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 275 / 5e-91 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 271 / 3e-89 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 267 / 4e-88 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 266 / 7e-88 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 263 / 6e-87 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 261 / 2e-86 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 260 / 1e-84 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 259 / 1e-84 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017100 [exp] 290 / 4e-97 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 289 / 7e-97 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.003G036900 [exp] 278 / 6e-92 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.006G129300 [exp] 277 / 7e-92 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 276 / 1e-91 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G048000 [exp] 275 / 2e-91 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.016G088500 [exp] 275 / 6e-91 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.007G028800 [exp] 275 / 1e-90 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 274 / 2e-90 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G027200 [exp] 273 / 5e-90 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039869 pacid=23165256 polypeptide=Lus10039869 locus=Lus10039869.g ID=Lus10039869.BGIv1.0 annot-version=v1.0 ATGTTGGAGAAGATGGGATCTTCAGCTGAAGAATCATCAACAACAATTCTCTCTAGTACTACTGGCTTCTCACATGATCATCACCAACTTCTATCTTCGT CGGCATCGATCATCAACCCTCCTCCTCCTTCTGCTAAGAAGAAGAGAAACCTCCCAGGAAATCCAGGCAAGTATCCAGAAGCGGAAGTGATAGCCTTGTC ACCAAAGACGCTGATGGCGACCAACAGATTCCTATGCGAGATATGCGGAAAAGGGTTTCAGAGGGATCAGAATCTACAACTTCACAGGAGGGGGCACAAC CTGCCGTGGAAGTTGAAGCAGAGGACTAGTAAGGAGATCCGGAAGAGGGTCTACGTATGTCCCGAGAAGAGCTGTGTTCATAACCACCCATCAAGGGCAC TTGGGGACTTGACTGGGATCAAAAAGCACTTCTGTCGAAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAGTGTGCAAAGAGGTATGCTGTTCAGTCTGA CTGGAAAGCTCACTCCAAGACTTGTGGCACTAGGGAGTACAAGTGTGACTGTGGGACTTTGTTCTCTAGGTAA
AA sequence Show only first row Show all	>Lus10039869 pacid=23165256 polypeptide=Lus10039869 locus=Lus10039869.g ID=Lus10039869.BGIv1.0 annot-version=v1.0 MLEKMGSSAEESSTTILSSTTGFSHDHHQLLSSSASIINPPPPSAKKKRNLPGNPGKYPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHN LPWKLKQRTSKEIRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYKCDCGTLFSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	0	1
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10042114 [exp]	4.0	0.7469
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	5.8	0.7764
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	7.3	0.7666
					Lus10039390 [exp]	9.2	0.7563
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10040836 [exp]	9.9	0.7427
					Lus10006631 [exp]	11.4	0.7371
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	11.5	0.7695
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	15.7	0.7553
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	16.7	0.7350
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	17.0	0.7186

Compare expression of checked genes

Lus10039869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.