Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 1174 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 1017 / 0 HD HB-1 homeobox-1 (.1) AT4G12750 127 / 4e-29 Homeodomain-like transcriptional regulator (.1) AT4G03250 66 / 1e-10 HD Homeodomain-like superfamily protein (.1) AT5G08630 47 / 0.0001 DDT domain-containing protein (.1) AT1G73360 45 / 0.0004 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT1G79840 44 / 0.001 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT5G03790 43 / 0.001 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeobox 51 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018634 [exp] 2794 / 0 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015325 [exp] 707 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 684 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10033644 [exp] 189 / 2e-53 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10017688 [exp] 186 / 3e-52 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10012302 [exp] 144 / 5e-34 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 126 / 1e-28 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10015400 [exp] 92 / 4e-20 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 92 / 4e-20 AT1G28420 161 / 4e-45 homeobox-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016200 [exp] 1741 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.007G135500 [exp] 1706 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 1198 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 1182 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 166 / 6e-41 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 67 / 1e-10 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 64 / 6e-10 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 48 / 6e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.007G135100 [exp] 44 / 0.0003 AT5G53980 85 / 3e-21 homeobox protein 52 (.1) Potri.003G096000 [exp] 45 / 0.0008 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [flax] [poplar] DDT DDT domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10039870 pacid=23165099 polypeptide=Lus10039870 locus=Lus10039870.g ID=Lus10039870.BGIv1.0 annot-version=v1.0 ATGGAGGATTCCGGCGGCGTTGCTACTACTCCAGCTGGCGGTGGTGGTGGAGGTGGTGGATCTTCTTCTTCTCCTGCTGTTGGTACGGAGAAGAAGTCAG CTGAAGGGGATAATAAGTCTAGTAAGCGGAAAATGAAGACTGCTTCTCAGCTTGAGGTTCTCGAGAGGACTTATGCTGCGGAAGCATATCCGTCGGAGGC ATTGAGGATTGAGCTCTCGGCACAGTTGGGGCTGTCTGATCGTCAGCTGCAGATGTGGTTCTGCCATCGGAGATTGAAGGATAGGAAGAGTGCGCAAGGG AAGAGTCAACGCAAGGATTCTCCACCGCCTGCAGCTGCTGCATTGCCTGCTACTGTACTACCTGGGGAGGAAATGGTGGCTGTGAGTGAAGCATATAGGG AACATTTGCCGGCATCGGCATCAGCATCTACTTCACGGTCGAGTCCGTTCGGGCATGTGATGGATCCGCGGCGATTAGTGGCTAGGGCTGCCGGGGTTGC TGTTCCGAGGATTAGTGGTGATCCTTTGACGGTGAAGAGGTACTATGAACAGCAGCACTCAATTCAAGAGCTTAGGGCAATAGCATTTGTCGAGGCGCAG TTGGGGGAACCATTGAGGGACGATGGTCCCATTCTTGGGATGGAATTTGACTCCTTGCCGCCAGATGCGTTTGGCGCACTTATAGGGTCTGCTGCTACAT TGGGGCATCAGAAGGCATCAGGACGACATTTCGAGTCCAACCTGTATGAGCGATCTGATGCAAAAGCTACCAAGGGTCCTACAAGAGCGTTGCATGAGTA CCAGTTTCTTCCCCAGCAGCCAAGTGTTAGGGCAGATGGATACGAGAGAACTGCTCCATTGTACTCATATGGTTCACCTTCTGATAGTCATAGTACAAAA AATGTACCCTTAACTGCTGGACGCCCCTTCATGCACGGAAATGAGCAACCATCCTCGGGATATGGATTTCCGGGTCACGTGCCTAGTTTAAGTCTTATGC CCCAAGAAGTCCGGCAGGGCCATCATCTTCTGCTATCGTCTGGAGAGTTTGACACTGCCTCACAAAGGAACACTTTTGCGAACATGGAAATGGATGCCCA GCTTGGTCCTCATGCTATCACTGCTTTGGAGAATCCATTTACATCATCTGACAGGAGGGTTGATCATACTGAGGACGTGTTGCGCATGGAAAGGAAGCGG AAGAGCGAAGAGGCAAGATTAGCACGTGAAGTTGACGCCCACGAAAAGAGAATTCGGAAAGAGCTTGAACGGCAGGATATTTTGAGACGAAAGAGGGAAG AGCAAATAAGGAAAGATCTAGAAAGACAAGAGCGTGAAAGAAGGAAGGAAGAAGAAAGAGTGATGCGTGAAAAGCAGAGAGAAGAAGAGAGATACCAGAG AGAGCAAAGGCGTGAAATGGAGCGTAGAGAGAAGTTCTTGCAGAAGGAATCTCTCAAAGCTGAGAGAATGAGACAAAAAGAAGAAATGCGCAGGGAGAAG GAGGTAGCAAGGCAAAAAGCTGCTACCGAAAGAGCTCATGCTCGAAGAATTGCAAAAGAATCTGTGGAGCTCATTGAGGATGAGAAATTGGAACTCATGG AGCTAGCTGCATCAAGCAAGGGGTTGCCTTCGCTGCTTGCGCTGGACTTGGAATCTTTGCAAAATCTTGACTTGTTTAGAGACGAGCTGTCAACATTTCC TCCCAAATCTGTGCCTTTGAGAAGGCCTTTTGCAGTTCAACCATGGAGCAACTCTGAGGAAAATATAGGAAACCTTCTTATGGTCTGGAGATTCATTATT ACTTTTACTGATGTTCTTGGTTTATGGCCATTCACTTTTGATGAGTTCGTCCAAGCTTTTCATGATTATGATCCGAGGCTTTTGGGTGAAATTCACGTGG CCTTGCTTAAATCCATTATTAAAGACATTGAAGATGTGGCTAGGACACCAGCCTCTGGGCTTGGAACAAATCAGAATAGTAGTGGTAATCCTGGTGGTGG TCATCCACGGATTGTTGAAGGGGCATATGCATGGGGTTTTGATATACGTAATTGGCAGCGCCACTTAAATCCACTCACATGGCCTGAAATATTAAGGCAA TTCGGTCTTTCAGCTGGATTTGGCCCTCGGCTGAAGAGAAGGAAAGTTGAGCAGTTCCGTGATGACAATGAGGGCAATGATGGTAAAGATGTGATTAGTA ATTTACGGAACGGAGTAGCTGCAAAGAATGCTGTTGCCATAATGCGCGAAAGAGGTTTCGCCAATCCACGCAGATCTAGGCATCGCTTAACACCTGGCAC GGTTAAATATGCGGCATTTCATATTCTTTCTCTCGAGGGGAGCAATGGTCTATCGATATTTGACGTAGCAGAGAAGATTCAGAAATCTGAATTGAGGGAT CTTTCCACAAGCAAGACACCAGAAGCTTCAATTGCTGCTGCACTGTCTAGAGATACAAAGCTCTTTGAGAGAACTGCTCCATCCACATATTGTGTACGTA CTCCATATAGGAAGGATCCTTTTGATGCTGAAGCTATACTTTCTGCTGCTAGGGAAAAAATCCAGATATTTAAAAGTGGTCTTGTGGAAGAAGATGCTGA TGAAGCTGAAAGAGATGAGGATTCTGAGAGTGATGTAGCTGAGGATCCTGAGGTTGATGATTTAGATGGTGATTTAAATTCCAACAAAGAGAGTTACTGT TCTCCAGAATTAGGCAAGTTTGGTGTCCAGTCTTCAGTGGAAAATGGAAAGGACGAGAAAAATGATGTTAAAAAGGAACAGGTTTGCGCTGAAAAGGTTG ATGGATCCTCTTCAGTGTGTCTCGAAAGTTCTAACCAATCGAAAGGTTCTGCTGCTGCTGTCGACCACACTGTCAGTGCTAAAGCGGTCTCGAGCATTGT TGAAAATACAGATATTGATGAAAGCAATCCTGGTGAACTGTGGGTTCAGGGATTAACGGAGGGTGAATACTCTGATCTGAGTGTAGAGGAACGCCTCAAT GCTTTAGTTGCATTGGTTGGTGTGGCAAATGAAGGGAATTCAATTCGTCTGGTCTTAGAGGAACGCCTAGATGCAGCAAATGCTCTGAAGAAGCAAATGT GGGCAGAGGCTCAACTTGATAAACGTCGTACAAAAGAAGATTATTTCCTAAAGCAATGTTCACAATTTGCTGGACATAAGATGGATCCTAACCTCTTAAC TCCAGTGACAGAGGGTAGGCAGAGCCCACTGATTACTTTTGATGAGAAAATCAAGACTACACCTCTGAGTGCTATAGTTTCGCAGGAACAACCAAGGGAC CCTGAGAATGATGTAAACCTTCATAAGAATTTTCCTTCTGAAGGGAATACTCAAATCCAGGATCTCCCAGTGGGTGCTGATAATCTCCCATACAATCATT TAGGACACGTCAGTGAAAGATCCCGGTCACAGTTAAAATCTTTTGTCAACCACAAGGCTGAAGAAACTTATGTATATAGATCACTGCCTCTTGGTCTAGA TCGCAGACGCAATCGATATTGGCAATTTGTAACGTGTCCATCTCGTAATGATCTTGGTTGTGGCAGGATCTTTGTTGAGTTACATGATGGCCGTTGGAGG CTTATTGACTCAGAAGAGGGTTTTGATTCACTTTTAGCATGTTTGGATGTCCGTGGCGTGAGAGAATCCCATCTGCACTTCGTGTTGCGAAGGATTGAAA AATCATTCAAGGAAACTGTCCGGGGGACTTTGCTTCAAGCCAAGACAGAGAATGGTGTCACTAATGGCGATGATAGCCCTAGAAGTGCTGTTTGTCCAAC TGACTCTGATGCATCCGAGACCTCTACTTCGTTTTCTATAGAACTTGGACGAAATAGGAGCGAGAGGAATAGTTCCTTGAAGAGATACTGCGATTTCGAG AGGTGGATGTGGAAAGAATGCTCTAGTACGACACTATTGTGTGCAACAAAGTATGGGCAGAAAAGATGCACGCAGCTGTTAGGGATTTGTGCCGACTGCC ATGATATTTATTTTTCCGAAGAGGACTCATGGTGTCCTTGCAATCGAGCACCTGATCCCACCAAGGCAATCGATGATCTTCCTCAAAATGTTAATAATTA TTCTCCTGTGAGGATCCGGGTTCTTAAATTGCTATTAGCTTTGATTGAGGTTTTGCTCCCGCCTGAAGCTCTTGAACCTTTCTGGACAAGTGCTCTTAGG AAATCATGGAGTAAGAAGTTGTCGTCAATGTCATCAGCTGAAGAGAAACTTCAGGCGCTAACCTTGTTGGAGGCTGCTCTAAGGAAGGACTATCTATCAT CCAACTTCGAAACAACTAGCGAACTGTTGGGAATGTCCGACCCACCTGGATTCGATGCTGCTACTGTTTCCTCAAGTATGGACATGGTCCCTCTACTTCC ATGGTTGCCACGAACAACGGCAGCTGTTGCTCTAAGAGTCATGGAGTTCGATGCATCCATCGCCTATATTCTCCAGCAGAAAGTGAAATTGGAGGAGGAT AAAATTGCTGGGGACTTCAGTGCTGTTGCGAATAGCTCGTACAGTATCCAGACCTCTGGAACTTTTGATAAAGGCGGAGCGTATCAAGAGGATAGTTGGG TTGACGTTGGGAATGGTTCGGGTGGGTTCAGCAATGGACGAGCATACCGTGGGGGACGGGGTCGCAAGCAATTAGCTCATAGTGGACCGCAATCCCAGAG AAAGGTCACCGGCCCGAGATCAGACTCGCGCAAAAGAAACACGGTATCATCGGGGTTGGCATGGAAAGGACGGCCTCGAGTACGCGGTGGGCGGAAACGT GGACGGCCCAGTGCCGGAAGCCGGCAGAAATCGGCAGCCAAGACTACTGTAACCGTAATTGCCCCTCAAAGAGAGATCTTGAAAGAAACTGTCTTTGAGA AACCAAGAGACGAATGGAACGAAGAAGAAGCTAGGTTCCCAGTGGAGGTGGATGAAAATGCCAGTAGCTCAGAGAGATCAGATTACAACGCTGAGATTGG GAAACTCGGAGACTTCCAGCCTCTAAGCGATGACGATATGGAGGTGAATGAGGACGACCAAGACGAATACCGGGAAGAAGAGGAAGAGGAAGAGATGGAT GAATATGAAGATGAAGAGAGGAATCTGGAAGTTGATGGATACATTAATGCAGAGTCCGATGAAGAGATGGACGAAATGCAAGATGAGGATCGAGACCTGG ATGGGACGGCTTCTTCTTCGGATTTCAGTGATTAG
AA sequence Show only first row Show all	>Lus10039870 pacid=23165099 polypeptide=Lus10039870 locus=Lus10039870.g ID=Lus10039870.BGIv1.0 annot-version=v1.0 MEDSGGVATTPAGGGGGGGGSSSSPAVGTEKKSAEGDNKSSKRKMKTASQLEVLERTYAAEAYPSEALRIELSAQLGLSDRQLQMWFCHRRLKDRKSAQG KSQRKDSPPPAAAALPATVLPGEEMVAVSEAYREHLPASASASTSRSSPFGHVMDPRRLVARAAGVAVPRISGDPLTVKRYYEQQHSIQELRAIAFVEAQ LGEPLRDDGPILGMEFDSLPPDAFGALIGSAATLGHQKASGRHFESNLYERSDAKATKGPTRALHEYQFLPQQPSVRADGYERTAPLYSYGSPSDSHSTK NVPLTAGRPFMHGNEQPSSGYGFPGHVPSLSLMPQEVRQGHHLLLSSGEFDTASQRNTFANMEMDAQLGPHAITALENPFTSSDRRVDHTEDVLRMERKR KSEEARLAREVDAHEKRIRKELERQDILRRKREEQIRKDLERQERERRKEEERVMREKQREEERYQREQRREMERREKFLQKESLKAERMRQKEEMRREK EVARQKAATERAHARRIAKESVELIEDEKLELMELAASSKGLPSLLALDLESLQNLDLFRDELSTFPPKSVPLRRPFAVQPWSNSEENIGNLLMVWRFII TFTDVLGLWPFTFDEFVQAFHDYDPRLLGEIHVALLKSIIKDIEDVARTPASGLGTNQNSSGNPGGGHPRIVEGAYAWGFDIRNWQRHLNPLTWPEILRQ FGLSAGFGPRLKRRKVEQFRDDNEGNDGKDVISNLRNGVAAKNAVAIMRERGFANPRRSRHRLTPGTVKYAAFHILSLEGSNGLSIFDVAEKIQKSELRD LSTSKTPEASIAAALSRDTKLFERTAPSTYCVRTPYRKDPFDAEAILSAAREKIQIFKSGLVEEDADEAERDEDSESDVAEDPEVDDLDGDLNSNKESYC SPELGKFGVQSSVENGKDEKNDVKKEQVCAEKVDGSSSVCLESSNQSKGSAAAVDHTVSAKAVSSIVENTDIDESNPGELWVQGLTEGEYSDLSVEERLN ALVALVGVANEGNSIRLVLEERLDAANALKKQMWAEAQLDKRRTKEDYFLKQCSQFAGHKMDPNLLTPVTEGRQSPLITFDEKIKTTPLSAIVSQEQPRD PENDVNLHKNFPSEGNTQIQDLPVGADNLPYNHLGHVSERSRSQLKSFVNHKAEETYVYRSLPLGLDRRRNRYWQFVTCPSRNDLGCGRIFVELHDGRWR LIDSEEGFDSLLACLDVRGVRESHLHFVLRRIEKSFKETVRGTLLQAKTENGVTNGDDSPRSAVCPTDSDASETSTSFSIELGRNRSERNSSLKRYCDFE RWMWKECSSTTLLCATKYGQKRCTQLLGICADCHDIYFSEEDSWCPCNRAPDPTKAIDDLPQNVNNYSPVRIRVLKLLLALIEVLLPPEALEPFWTSALR KSWSKKLSSMSSAEEKLQALTLLEAALRKDYLSSNFETTSELLGMSDPPGFDAATVSSSMDMVPLLPWLPRTTAAVALRVMEFDASIAYILQQKVKLEED KIAGDFSAVANSSYSIQTSGTFDKGGAYQEDSWVDVGNGSGGFSNGRAYRGGRGRKQLAHSGPQSQRKVTGPRSDSRKRNTVSSGLAWKGRPRVRGGRKR GRPSAGSRQKSAAKTTVTVIAPQREILKETVFEKPRDEWNEEEARFPVEVDENASSSERSDYNAEIGKLGDFQPLSDDDMEVNEDDQDEYREEEEEEEMD EYEDEERNLEVDGYINAESDEEMDEMQDEDRDLDGTASSSDFSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	0	1
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	1.0	0.9055
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	2.2	0.8896
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	2.4	0.9044
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	2.4	0.8879
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	4.9	0.8728
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	5.9	0.8470
AT3G45830			unknown protein		Lus10018121 [exp]	6.9	0.8902
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	7.5	0.8796
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	9.8	0.8709
AT5G22450			unknown protein		Lus10004878 [exp]	10.8	0.8781

Compare expression of checked genes

Lus10039870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.