Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 866 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 799 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 613 / 0 HSL2 HAESA-like 2 (.1) AT1G09970 543 / 2e-180 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28650 531 / 9e-176 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G19700 517 / 2e-170 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G49660 508 / 4e-167 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 498 / 7e-163 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 496 / 2e-162 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 490 / 6e-160 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018636 [exp] 1385 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 859 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 851 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 561 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 555 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 502 / 5e-166 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 503 / 7e-165 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10006028 [exp] 501 / 9e-164 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 499 / 8e-163 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135400 [exp] 1003 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 999 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 905 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 865 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.002G106800 [exp] 568 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 561 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.006G235800 [exp] 523 / 1e-172 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G111700 [exp] 519 / 9e-171 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G057100 [exp] 518 / 2e-170 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G256500 [exp] 508 / 2e-166 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039872 pacid=23165226 polypeptide=Lus10039872 locus=Lus10039872.g ID=Lus10039872.BGIv1.0 annot-version=v1.0 ATGGCGGATTGTAATCTTCAAGGTCCGATTCCTGACTCGTTAGGTGAGTTGGGTAAGCTGGAGAATCTCGACCTGACTAATAACCGACTCACCGGTTCGA TTCAGAGTTCGATAACTCGTCTGAAGAGTATCGTCCAGATTGAGCTCTATAACAACTCGCTCACCGGCGAGTTGCCTCTTGGGTTCTCCAATTTAACAAC GCTCCGGAGATTCGATGCGTCGATGAATCAGTTGTCCGGTCCAATTCCCGATGAGCTTTGTAGTCTCGAGCTTGAGTCTCTCAACTTGTTCGAGAATCGG TTCGTAGGGACTCTGCCGGAGAGTATCGCGAACTCGCCGAATTTGTACGAGCTCAAGCTGTTCAACAATAGTCTCAACGGTACTCTCCCGAGTCGACTCG GTAGCAACTCGCCGTTGATGAGGCTGGATGTGTCGTACAACAGTTTCTCCGGCGGGATTCCGGAGAACCTCTGCGAGAAAGGATTGCTCGACGATCTGAT TCTGATCTACAATTCGTTCTCCGGGGAAATTCCGGTGAGTCTAGGGAAATGTCGTAGCTTAGGCCGAGTTCGTTTGAAGAACAATCGGCTGTTTGGATCG GTTCCGGACGATCTGTGGGGGCTGCCAGGGATGTATTTGCTTGAGCTCGATGGGAATTCTTTGTCCGGACCAATTTCCGGCAAGATTTCGTCTGCTTATA ATCTGTCAATTCTGCTTATATCAAAGAATCAGTTTTCAGGCTCAGTACCAGTAGAGATCGGTTATTTGGGGAATCTGATTGAGTTTTCAGCTTCTGATAA TCAACTCACTGGCGAAATTCCGATCAGTCTGGTGAAGCTGAAGCAATTGGGGAGGCTTGTTCTGAGCAACAACAAATTATCCGGCGAGTTCCCCGCCGGA GTTGAAGATTGGAAGAACTTGTTTGAGCTTAACCTGGCAAACAACGATCTCTGCGGCGAAATCCCAGGTAAGCTTGGAAGCTTTCCGGTGTTGAACTATC TGGATCTTTCAGGGAATGAGTTTACTGGGAAGATCCCAGCAGATCTGGAGAAGCTGAAGCTTAATTTACTCAACTTGTCAAATAACAAGTTATCAGGTAA GCTACCTCCAATGTTTGCCAAGGAAATGTACAGGAAAAGCTTTGTTGGGAATCCAGGGTTGTGTGGAGACATGGAAGGCCTCTGCCCACAGAAAGACGAG GAGGAGTCGAAAAAGGAGAGGAATTTATGGATCCTCCGATCGATTTTCATAGTTGCTGTGTTAGTGTTCATCACTGGGGTTTCCTGGTTCATACTCAAAT TGAGGAGTTTGAAGAAGAAGGGGAAATCAGGCGGGGTAGTGATATCGAAATGGAGATCATTCCATAAGCTCGGATTCAGCGAATCCGAGATCCTAGATTA CCTTAAAGAAGACAATGTCATAGGCAGTGGAGCTTCTGGGAAGGTGTACAAGGTTGTTCTAAGCAACGGTGAGACCGTGGCGGTGAAGAAGCTGTACGGT AGTGTTGGCAAGAACATTAATGATGCAAGTAAGGGCGAAAGGGACGAATTCGAAGTGGAAGTGGGGACGTTGGGGAGTATCAGGCACAAGAACATAGTGA AGCTGTGGTGTTGCTGCAATACCGTGGACTGCAAGCTACTGGTGTACGAGTATATGCCTAATGGAAGCTTGGGAGATTACTTGCACTGCAAGAAAGGTTG TGGGGCTGGGAGGTTGCTTGATTGGCCTACTAGGTTCAAGATTGCTATGGATGCTGCTGAAGGGTTGTCGTATTTGCACCACGACACTGTCCCTCCGATC GTGCACCGAGATGTGAAATCGAACAACATCCTGCTGGATGGAGAGTTCGGTGCTAGGGTTGCGGATTTTGGGGTTGCCAAGATTGTCCATGGTGTTAGCA AAGACACTCAATCCATGTCCGTCATCGCCGGTTCCTATGGCTACATTGCTCCAGAGTATGCATACACGTTAAGGGTGAATGAGAAGAGCGACATCTACAG CTTCGGAGTAGTGATACTGGAGCTAGTGACAGGGAGGCTCCCCGTAGACCCCGAATTCGGGGAGAAAGACTTGGTGAAATGGGTTTACTCCGTACTTGAT CAAAAGAGTGTGGATCAAGTAATTGACCCGAAGCTGGATTCGAGCTTCAGGGACGAAATATGCAGAGTTCTCGACGTTGGTCTTCGCTGCACGAGCTCGC TCCCGATAAGCAGGCCCTCGATGCGGCGGGTGGTGAAGATGCTGCAAGAAGCTGGGAAAGAGATGAAGTCGATCAGGTCCGGGAAGAAACCGCCATGTCA GCAGCTCTCGCCGTATTTCCAGGAGGAATCATCATCGGATAATCTCGTATAG
AA sequence Show only first row Show all	>Lus10039872 pacid=23165226 polypeptide=Lus10039872 locus=Lus10039872.g ID=Lus10039872.BGIv1.0 annot-version=v1.0 MADCNLQGPIPDSLGELGKLENLDLTNNRLTGSIQSSITRLKSIVQIELYNNSLTGELPLGFSNLTTLRRFDASMNQLSGPIPDELCSLELESLNLFENR FVGTLPESIANSPNLYELKLFNNSLNGTLPSRLGSNSPLMRLDVSYNSFSGGIPENLCEKGLLDDLILIYNSFSGEIPVSLGKCRSLGRVRLKNNRLFGS VPDDLWGLPGMYLLELDGNSLSGPISGKISSAYNLSILLISKNQFSGSVPVEIGYLGNLIEFSASDNQLTGEIPISLVKLKQLGRLVLSNNKLSGEFPAG VEDWKNLFELNLANNDLCGEIPGKLGSFPVLNYLDLSGNEFTGKIPADLEKLKLNLLNLSNNKLSGKLPPMFAKEMYRKSFVGNPGLCGDMEGLCPQKDE EESKKERNLWILRSIFIVAVLVFITGVSWFILKLRSLKKKGKSGGVVISKWRSFHKLGFSESEILDYLKEDNVIGSGASGKVYKVVLSNGETVAVKKLYG SVGKNINDASKGERDEFEVEVGTLGSIRHKNIVKLWCCCNTVDCKLLVYEYMPNGSLGDYLHCKKGCGAGRLLDWPTRFKIAMDAAEGLSYLHHDTVPPI VHRDVKSNNILLDGEFGARVADFGVAKIVHGVSKDTQSMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDPEFGEKDLVKWVYSVLD QKSVDQVIDPKLDSSFRDEICRVLDVGLRCTSSLPISRPSMRRVVKMLQEAGKEMKSIRSGKKPPCQQLSPYFQEESSSDNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10039872 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	5.3	0.7347
					Lus10008146 [exp]	5.5	0.7079
AT4G17900			PLATZ transcription factor fam...		Lus10020337 [exp]	5.8	0.7485
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	11.1	0.7125
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	12.0	0.6734
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	18.0	0.7177
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	20.5	0.7033
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	20.6	0.7091
AT1G63430			Leucine-rich repeat protein ki...		Lus10008486 [exp]	29.7	0.6748
AT5G04460			RING/U-box superfamily protein...		Lus10028827 [exp]	32.6	0.6684

Compare expression of checked genes

Lus10039872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.