Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28500 348 / 1e-120 NAC ANAC073, SND2, NST7 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) AT1G28470 299 / 6e-101 NAC ANA010, ANAC010, SND3, NST8 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3, NAC domain containing protein 10 (.1) AT4G29230 301 / 3e-99 NAC ANAC075, NST9 NAC domain containing protein 75 (.1) AT5G56620 278 / 9e-92 NAC ANAC099 NAC domain containing protein 99 (.1) AT1G25580 213 / 9e-66 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G14490 177 / 5e-53 NAC ANAC085 NAC domain containing protein 85 (.1) AT3G01600 173 / 4e-51 NAC ANAC044 NAC domain containing protein 44 (.1) AT1G02230 74 / 1e-14 NAC ANAC004 NAC domain containing protein 4 (.1) AT3G18400 73 / 2e-14 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G53950 70 / 2e-13 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018637 [exp] 512 / 0 AT4G28500 350 / 2e-121 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10013967 [exp] 306 / 1e-103 AT4G28500 320 / 2e-109 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10015392 [exp] 298 / 8e-101 AT4G28500 308 / 2e-105 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Lus10034999 [exp] 288 / 7e-94 AT4G29230 388 / 3e-130 NAC domain containing protein 75 (.1) Lus10012927 [exp] 280 / 4e-92 AT4G29230 346 / 3e-115 NAC domain containing protein 75 (.1) Lus10021708 [exp] 224 / 7e-70 AT1G25580 462 / 4e-161 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10041492 [exp] 214 / 1e-66 AT1G25580 486 / 7e-171 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003668 [exp] 209 / 3e-64 AT5G14490 273 / 2e-88 NAC domain containing protein 85 (.1) Lus10020165 [exp] 72 / 9e-14 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016700 [exp] 383 / 4e-134 AT4G28500 344 / 4e-119 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.007G135300 [exp] 354 / 6e-123 AT4G28500 337 / 3e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.004G049300 [exp] 327 / 9e-112 AT4G28500 353 / 1e-122 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.011G058400 [exp] 320 / 2e-108 AT4G28500 344 / 4e-118 SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 2, NAC domain containing protein 73 (.1) Potri.006G152700 [exp] 296 / 9e-98 AT4G29230 489 / 9e-171 NAC domain containing protein 75 (.1) Potri.018G068700 [exp] 294 / 3e-97 AT4G29230 511 / 2e-179 NAC domain containing protein 75 (.1) Potri.010G129700 [exp] 228 / 1e-71 AT1G25580 476 / 5e-167 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.008G116600 [exp] 227 / 2e-71 AT1G25580 509 / 4e-180 SUPPRESSOR OF GAMMA RADIATION 1, Arabidopsis NAC domain containing protein 8, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G343800 [exp] 218 / 4e-68 AT3G01600 266 / 5e-86 NAC domain containing protein 44 (.1) Potri.019G031600 [exp] 72 / 7e-14 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10039873 pacid=23165156 polypeptide=Lus10039873 locus=Lus10039873.g ID=Lus10039873.BGIv1.0 annot-version=v1.0 ATGACATGGTGCAATGACTGCACTGATGTCCAGACGATCGAAACCAGCTCTCCTCCTCCTCCTCCACCTCTACCGAGCCCGAATCCAAATTCGACCACTC ATCATCATCAACATCATGCAGCTAATCATCGACACGGCTTCACTAAAAGCTGCCCTTCTTGTGGCCACCAGATCAAATGCCAAAACCAGGCGAGGCTGCA CGATCTGCCAGGGCTGCCGGCGGGGGTGAAGTTTGATCCGACGGATCAGGAGCTGCTAGAGCATCTAGAAGGCAAAGTAAAATCAGATGCTGGAATGCTT CATCCTCTTATTGATGAGTTCATCCCCACCATTGACGGCGAGAACGGCATTTGCTACACTCACCCTGAAAAATTGCCAGGAGTGAGCAAAGACGGACTAG TACGCCACTTCTTCCACCGGCCATCGAAAGCCTACACCACGGGCACCAGAAAGCGCCGAAAAGTCCACTCCGACGACACCACAGAAGGCGGTGGCGAAAC AAGGTGGCACAAAACGGGCAAAACCAGAGCGGTCCAGATCGGAGGCAAAACCAAAGGCTACAAAAAAATCCTCGTACTCTACACAAACTACGGCAAGCAG AAGAAGCCCGAAAAGACCAGCTGGGTCATGCACCAGTACCACCTCGGGTCCAGCGAAGACGAAAAAGATGGCGAGCTCGTCGTCTCCAAAGTCTTCTACC AGACCCAGCCCCGCCAGTGCAAGGCGACTTCGACTTCGTCGTTCTTGATGATGACTCATCATCACCATGACGAGTACTACGGTTCGAATGCTAATATTGG GTTCACAACGAGCACCTATTCTGGTGGGGACCACCAGAGTAGCAGGTCGTTGTCTGGGGTTGCCGGTGTTTCTTCTCAGCAGTCGAGTCAGCATTTGATG AACCCTCATTTTACGGTTCATGATGGTTCGCCTAATTATGATATTCCATGA
AA sequence Show only first row Show all	>Lus10039873 pacid=23165156 polypeptide=Lus10039873 locus=Lus10039873.g ID=Lus10039873.BGIv1.0 annot-version=v1.0 MTWCNDCTDVQTIETSSPPPPPPLPSPNPNSTTHHHQHHAANHRHGFTKSCPSCGHQIKCQNQARLHDLPGLPAGVKFDPTDQELLEHLEGKVKSDAGML HPLIDEFIPTIDGENGICYTHPEKLPGVSKDGLVRHFFHRPSKAYTTGTRKRRKVHSDDTTEGGGETRWHKTGKTRAVQIGGKTKGYKKILVLYTNYGKQ KKPEKTSWVMHQYHLGSSEDEKDGELVVSKVFYQTQPRQCKATSTSSFLMMTHHHHDEYYGSNANIGFTTSTYSGGDHQSSRSLSGVAGVSSQQSSQHLM NPHFTVHDGSPNYDIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	0	1
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	1.0	0.9930
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	1.7	0.9883
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	2.2	0.9848
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10036619 [exp]	2.4	0.9896
AT3G52480			unknown protein		Lus10004203 [exp]	3.9	0.9764
					Lus10011724 [exp]	4.2	0.9830
AT5G06610			Protein of unknown function (D...		Lus10013534 [exp]	4.7	0.9723
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	4.9	0.9859
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10028263 [exp]	5.1	0.9768
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10017175 [exp]	5.3	0.9766

Compare expression of checked genes

Lus10039873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.