Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27740 678 / 0 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT1G25220 66 / 5e-12 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 66 / 1e-11 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 63 / 3e-11 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 63 / 3e-11 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 63 / 3e-11 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 61 / 1e-10 Glutamine amidotransferase type 1 family protein (.1) AT1G63660 46 / 4e-05 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018639 [exp] 873 / 0 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10030761 [exp] 67 / 5e-12 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10013241 [exp] 65 / 1e-11 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080900 [exp] 755 / 0 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 749 / 0 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.008G138800 [exp] 67 / 3e-12 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G102200 [exp] 66 / 5e-12 AT1G25220 401 / 1e-142 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [flax] [poplar] Glutaminase_I PF00117 [flax] [poplar] GATase Glutamine amidotransferase class-I CL0364 [flax] [poplar] Leu-IlvD PF00988 [flax] [poplar] CPSase_sm_chain Carbamoyl-phosphate synthase small chain, CPSase domain
Representative CDS sequence Show only first row Show all	>Lus10039874 pacid=23165068 polypeptide=Lus10039874 locus=Lus10039874.g ID=Lus10039874.BGIv1.0 annot-version=v1.0 ATGGAGCTCGCGTTCGCTAATCCTTCATCCACATCATTATTCACCATCACCAAAGCTTCACCGAGCTTCTTTAAAGCCAGGCCCACCAAGGTTTTCACCC TCCGCTGCTCTTCCAACTCGCCCGCCGCCGCCGCTGGTGTGGTGGAAAGGCCATGGAAAACTTCAGATGCTAGGCTTGTGCTTGAAGATGGCTCAGTGTG GAAGGCCAAGTCGTTTGGTGCCACTGGTACTCAAGTTGGTGAAGTCGTTTTCAACACCTCCATGACAGGGTATCAGGAGATCCTCACGGACCCTAGTTAT GCTGGACAATTTGTGCTGATGACTAACCCTCACATCGGCAACACTGGTGTGAACCTCGATGACGAAGAATCGATGCAGTGTTTCCTTGCTGGTTTGGTGA TCAGGAGCTTAAGCATTAGTACCTCAAACTGGAGATGCACCAAAACTCTTGGTGATTATCTAACAGAGAGGAACATCATGGGGATATATGATGTGGACAC TCGTGCGATTACACGGAGATTGAGGCAAGATGGAAGCCTTATCGGTGTGCTCAGCACAGAACAATCGAAGAGCGATGAACAACTCCTTGATATGTCTCGC TCGTGGGATATCGTAGGTGTCGATCTTATAAGTGGTGTATCATGCACTGAACCTTATGAATGGGTCGATAGGACGAAATCGGATTGGGATTTCAACACCG AGGGAACCGGAGAGGTCTTCCATGTCGTTGCTTATGATTTCGGGGTGAAACATAACATCCTGCGACGATTAGCTTCGTACGGCTGCAAAATCACCGTAGT CCCTTCGAAGTGGCCTGCTTCGGAAACCCTAAAGATGAACCCAGACGGGGTTCTCTTCAGCAACGGTCCGGGAGACCCGTCTGCAGTACCTTACGCAGTC GAAACGGTCAAGAACTTGCTGGGTAAAGCTCCAGTCTTTGGAATCTGCATGGGCCACCAATTGCTGGGGCAGGCATTAGGTGGCAAGACCTTCAAGATGA AGTTCGGTCACCACGGAGGAAACCACCCCGTTCGCAACACCCGTGCTAACCGTGTCGAGATTAGCGCTCAGAATCACAACTATGCAGTCGACCCGGCATC GCTCCCTGAAGGTGTGGAAGTGACTCATATCAATCTTAACGACGAAAGCTGCGCTGGACTCGCGTTCCCTGCCTTGAAGGTTATGTCCCTTCAGTACCAT CCCGAGGCATCTCCTGGCCCTCATGACTCGGACACTGTTTTCGGGGAATTTGTCGAGCTAATGAAGCAATCCAAGCAAAAAGCATAG
AA sequence Show only first row Show all	>Lus10039874 pacid=23165068 polypeptide=Lus10039874 locus=Lus10039874.g ID=Lus10039874.BGIv1.0 annot-version=v1.0 MELAFANPSSTSLFTITKASPSFFKARPTKVFTLRCSSNSPAAAAGVVERPWKTSDARLVLEDGSVWKAKSFGATGTQVGEVVFNTSMTGYQEILTDPSY AGQFVLMTNPHIGNTGVNLDDEESMQCFLAGLVIRSLSISTSNWRCTKTLGDYLTERNIMGIYDVDTRAITRRLRQDGSLIGVLSTEQSKSDEQLLDMSR SWDIVGVDLISGVSCTEPYEWVDRTKSDWDFNTEGTGEVFHVVAYDFGVKHNILRRLASYGCKITVVPSKWPASETLKMNPDGVLFSNGPGDPSAVPYAV ETVKNLLGKAPVFGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNTRANRVEISAQNHNYAVDPASLPEGVEVTHINLNDESCAGLAFPALKVMSLQYH PEASPGPHDSDTVFGEFVELMKQSKQKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Lus10039874 [exp]	0	1
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	1.4	0.9656
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	2.4	0.9717
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	4.2	0.9531
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10038908 [exp]	5.5	0.9542
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	8.5	0.9591
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	8.9	0.9435
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	9.6	0.9558
AT5G04520			Protein of unknown function DU...		Lus10028831 [exp]	14.5	0.9296
AT5G41190			unknown protein		Lus10001487 [exp]	15.6	0.9485
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	16.2	0.9491

Compare expression of checked genes

Lus10039874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.