Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44170 194 / 4e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G08125 64 / 2e-12 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018640 [exp] 224 / 6e-75 AT5G44170 348 / 1e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021425 [exp] 61 / 3e-11 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10016141 [exp] 41 / 0.0001 AT1G08125 183 / 7e-56 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017000 [exp] 179 / 2e-57 AT5G44170 316 / 3e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G006800 [exp] 64 / 2e-12 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10039876 pacid=23165061 polypeptide=Lus10039876 locus=Lus10039876.g ID=Lus10039876.BGIv1.0 annot-version=v1.0 ATGAAGTTCACAGACTCGCCGGTGATCGATCTCCAAATCGGCGACAAGCACCTCTCAATTCAACAAGACAACGGCTCGATGCACGTCGGCACCTCCGTCT GGCCCTGCTCCCTTGTACTCGCCAAGTTCATCGAGCGCTGGTCGGCAACATCACCGGCACCCTCCAGCTCCAGCTCCACCTCCACCTCCGCCGCCAAAAA CCCTTACTCCTCCCTCCTGGACTTCCGCTCCAAACGCCGCCGCGCAGTCGAGCTAGGAACAGGCTGCGGAGCCGCCGGGATGGCGCTCCACCTACTCGGG CTCACCGACATCATCCTCACAGATATCGCCCCCGTGATGCCGGCGCTGAAGCACAACCTCAAGCGGAACAAGCAAACCCTAGGTAAGATGCTGAAAACCT CCATCTTGTACTGGAACAATCAGGACCAGATGCGATCGCTCAACCCGCCGTTCGACTTCGTGGTGGCGGCAGATGTGGTGTACATCGAGGAATCGGTCGG GTAG
AA sequence Show only first row Show all	>Lus10039876 pacid=23165061 polypeptide=Lus10039876 locus=Lus10039876.g ID=Lus10039876.BGIv1.0 annot-version=v1.0 MKFTDSPVIDLQIGDKHLSIQQDNGSMHVGTSVWPCSLVLAKFIERWSATSPAPSSSSSTSTSAAKNPYSSLLDFRSKRRRAVELGTGCGAAGMALHLLG LTDIILTDIAPVMPALKHNLKRNKQTLGKMLKTSILYWNNQDQMRSLNPPFDFVVAADVVYIEESVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44170			S-adenosyl-L-methionine-depend...		Lus10039876 [exp]	0	1
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	2.2	0.8728
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	2.8	0.8553
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	2.8	0.8361
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10011915 [exp]	6.9	0.8471
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10032313 [exp]	8.4	0.8286
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	9.5	0.8287
AT5G08060			unknown protein		Lus10034681 [exp]	14.0	0.8053
AT1G64450			Glycine-rich protein family (....		Lus10023071 [exp]	14.0	0.8300
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005897 [exp]	15.3	0.7822
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	15.6	0.7908

Compare expression of checked genes

Lus10039876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.