Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37690 527 / 0 SGNH hydrolase-type esterase superfamily protein (.1) AT1G74460 289 / 2e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 262 / 1e-84 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 253 / 2e-81 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 253 / 3e-81 GLIP7 GDSL-motif lipase 7 (.1) AT3G50400 250 / 3e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 250 / 5e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 243 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 243 / 2e-77 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 240 / 3e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018641 [exp] 664 / 0 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10001643 [exp] 303 / 1e-100 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 302 / 1e-100 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 301 / 2e-100 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 300 / 1e-99 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 261 / 5e-84 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10005236 [exp] 259 / 8e-84 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 259 / 1e-83 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 258 / 2e-83 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130100 [exp] 554 / 0 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 538 / 0 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 304 / 4e-101 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 260 / 4e-84 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.008G104600 [exp] 256 / 8e-83 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 256 / 4e-82 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 254 / 7e-82 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 253 / 2e-81 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 251 / 1e-80 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 247 / 4e-79 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10039877 pacid=23165155 polypeptide=Lus10039877 locus=Lus10039877.g ID=Lus10039877.BGIv1.0 annot-version=v1.0 ATGGCAACTTATCTAGCTGCAATCCTGGTTGCTGTGTACTACTACTTCACTTCCAGAGGTTGCAACATTTTCGTCACAGCTGCAACCTCACCATCCCCAT CGCCATTACCATCGCACCCGAAGGAGCAACTCGTGACATTCGTGTTCGGGGACTCATTGACAGAAGTTGGTAACAACAATCACTTCCAGTACTCTCTGGC TAGGTCCGACTACCCCTGGTATGGAGTGGACTTCCCTGGCGGCCAGGCAACTGGAAGGTTCACTAATGGCAGAACCATTGGTGACATCATCTCTGAGAAG CTTGGCGTGGAATCGCCACCGCCATACTTGTCACTGTCGAGGAATGACGATAGGCTTCTCAAGGGTGTGAATTATGCATCTGGTGGAGCTGGGATTCTTA ATGAAACTGGCCTCTATTTTGTGCAGAGATTGACACTTGATGATCAGATTGATTGCTTCAGGCAGACAAAGGAATCGATCAAGGATAAGATCGGTGATGC CGCTGCGAACAAGCTTGCAAATGAGGCATTGTTCTTCATTGGCATTGGAAGCAACGATTATGTTAACAACTTCTTGCAACCATTTCTAGCAGACGGGCAA GAGTACACCCATGATGAATTCCTCAACCTCTTAACATCCACCTTAGACAAACAACTCTCCAGGTTATACCAACTCGGAGCACGAAAAGTCGTGTTCCACG GGCTGGGGCCGTTAGGGTGCATCCCATCACAAAGGGTGAAGTCAAAAACCGGTTCGTGCCTGAACCGAGTGAACGAATGGGTTTTGGAGTTCAACGACCG GGTCAAGAAACTAGTGGCCACTCTCAATGGTCGTTATCCGGGGTCGAAGCTCATATTTGCTGACACATACAATGACGTTCTGGACCTCATCGAGAATCCG ACGTCATACGGGTTCAAGATATCAAACACGTCGTGTTGTAATGTGGACACGAGCGTGGGAGGGTTGTGTATGCCGAGCGCCAACATGTGCAAAAACAGGA AGGACTATGTTTTTTGGGATGCTTTCCATCCATCTGATGGGGCGAACCAGATTCTGGCCGAGAAATTCTTCTCTAGTTTGTTTCCGGCTGCCTCTGCTCC GGGTCCTTGA
AA sequence Show only first row Show all	>Lus10039877 pacid=23165155 polypeptide=Lus10039877 locus=Lus10039877.g ID=Lus10039877.BGIv1.0 annot-version=v1.0 MATYLAAILVAVYYYFTSRGCNIFVTAATSPSPSPLPSHPKEQLVTFVFGDSLTEVGNNNHFQYSLARSDYPWYGVDFPGGQATGRFTNGRTIGDIISEK LGVESPPPYLSLSRNDDRLLKGVNYASGGAGILNETGLYFVQRLTLDDQIDCFRQTKESIKDKIGDAAANKLANEALFFIGIGSNDYVNNFLQPFLADGQ EYTHDEFLNLLTSTLDKQLSRLYQLGARKVVFHGLGPLGCIPSQRVKSKTGSCLNRVNEWVLEFNDRVKKLVATLNGRYPGSKLIFADTYNDVLDLIENP TSYGFKISNTSCCNVDTSVGGLCMPSANMCKNRKDYVFWDAFHPSDGANQILAEKFFSSLFPAASAPGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	0	1
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	1.0	0.9927
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	3.5	0.9566
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	4.0	0.9178
AT2G48140		EDA4	embryo sac development arrest ...		Lus10022067 [exp]	4.9	0.8795
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	5.5	0.9521
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	7.1	0.9374
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	7.2	0.9423
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10018217 [exp]	8.8	0.9334
AT3G45850			P-loop containing nucleoside t...		Lus10009073 [exp]	9.9	0.9165
					Lus10013619 [exp]	11.4	0.8703

Compare expression of checked genes

Lus10039877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.