Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000191 [exp] 181 / 3e-58 ND / Lus10039879 [exp] 180 / 6e-58 ND / Lus10029851 [exp] 179 / 2e-57 ND / Lus10014099 [exp] 147 / 2e-45 ND / Lus10019815 [exp] 146 / 7e-45 ND / Lus10037860 [exp] 147 / 8e-45 ND / Lus10014101 [exp] 145 / 2e-44 ND / Lus10019813 [exp] 143 / 1e-43 ND / Lus10028949 [exp] 143 / 2e-43 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081800 [exp] 154 / 8e-48 ND / Potri.014G081900 [exp] 153 / 3e-47 ND / Potri.002G158600 [exp] 152 / 3e-47 ND / Potri.002G158700 [exp] 152 / 5e-47 ND / Potri.014G082700 [exp] 148 / 2e-45 ND / Potri.019G100100 [exp] 146 / 9e-45 ND / Potri.014G082000 [exp] 138 / 2e-41 ND / Potri.003G126200 [exp] 129 / 6e-38 ND / Potri.009G009700 [exp] 108 / 4e-30 ND / Potri.017G153100 [exp] 108 / 1e-29 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039878 pacid=23165215 polypeptide=Lus10039878 locus=Lus10039878.g ID=Lus10039878.BGIv1.0 annot-version=v1.0 ATGAAGAACATTACTTCACCCCTTACTCTAATCTTTGCCCTACTACTATTCACCGCCACAATCCTCCTCGATGCCGCCGCAGCCCAAGCTTGCAATCCAA GCGGGCAACTAAGAGGCCAAAAGCCACCCCCAAACAAATGCACCAACGTCAACTTCGAATGCTGCGTTGAAGGCCAACTCTACACGACCTACGAATGCTC GCCACCTGTCACACAGAACACCAAGGCCACCCTGACCCTCACCAGCTTCGGAAGATCCTCGGAGTGCGATGACAGCTACCACACCGACGAGGAGCTCGTC GTGGCCCTTTCGACTGGGTGGTTCGAGGACGAGAGACGTTGCTTTCAGTTTATTAACATAACGGCGACAGTGACGGGTACTAGTGTGTTGGCGAATGTGG TGGACGAGTGTGACTCTAGTGAAGGGTGTGATGATGACCATGATTACAAGCCGCCATGTCGGAACGACGTCGTTCAAGGGTCCAAGGCTGTGTGGGATGC GCTTGGTGTGGCTCAAGAGGGTCGCGGTGAGATGAATGTTACTTGGTCGGTTGTGTGA
AA sequence Show only first row Show all	>Lus10039878 pacid=23165215 polypeptide=Lus10039878 locus=Lus10039878.g ID=Lus10039878.BGIv1.0 annot-version=v1.0 MKNITSPLTLIFALLLFTATILLDAAAAQACNPSGQLRGQKPPPNKCTNVNFECCVEGQLYTTYECSPPVTQNTKATLTLTSFGRSSECDDSYHTDEELV VALSTGWFEDERRCFQFINITATVTGTSVLANVVDECDSSEGCDDDHDYKPPCRNDVVQGSKAVWDALGVAQEGRGEMNVTWSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039878 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	1.4	0.8896
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	1.4	0.8782
AT3G07720			Galactose oxidase/kelch repeat...		Lus10012345 [exp]	3.0	0.8579
AT5G43400			Uncharacterised conserved prot...		Lus10013399 [exp]	3.5	0.8473
AT5G17350			unknown protein		Lus10035268 [exp]	6.7	0.8439
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	8.1	0.8319
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10030308 [exp]	8.5	0.8334
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10019340 [exp]	9.3	0.7829
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10002628 [exp]	14.0	0.8303
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	14.1	0.8343

Compare expression of checked genes

Lus10039878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.