Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000191 [exp] 346 / 4e-123 ND / Lus10029851 [exp] 239 / 9e-81 ND / Lus10039878 [exp] 187 / 1e-60 ND / Lus10014099 [exp] 176 / 2e-56 ND / Lus10014101 [exp] 172 / 5e-55 ND / Lus10019815 [exp] 171 / 2e-54 ND / Lus10019813 [exp] 170 / 6e-54 ND / Lus10028949 [exp] 167 / 5e-53 ND / Lus10037860 [exp] 163 / 5e-51 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100100 [exp] 178 / 4e-57 ND / Potri.002G158700 [exp] 175 / 9e-56 ND / Potri.014G081800 [exp] 174 / 2e-55 ND / Potri.014G082700 [exp] 174 / 2e-55 ND / Potri.014G082000 [exp] 173 / 6e-55 ND / Potri.002G158600 [exp] 171 / 4e-54 ND / Potri.014G081900 [exp] 163 / 3e-51 ND / Potri.003G126200 [exp] 159 / 3e-49 ND / Potri.009G009700 [exp] 124 / 8e-36 ND / Potri.017G153100 [exp] 123 / 5e-35 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039879 pacid=23165293 polypeptide=Lus10039879 locus=Lus10039879.g ID=Lus10039879.BGIv1.0 annot-version=v1.0 ATGCTTTCCCCTCACCAAATCATCATCACAACAACACAATATGAAGAACCTTACACTACTCATCACCTACTATTCACCATCTTCATCGCCGCCGCCGAAG CCCAAACTTGCAAACCAAGCGGCCACCTTCAAGGCAAAAAGCCACCCCCGAAAAAATGCAACAAGCAAAACAACTCCGAATGCTGCGTCGAAGGCAAACT CTACCCGACCTATAAATGCTCGCCACCTGTCACCAAGCACACCAAGGCCACCCTAACCATCAACAGCTTCGAAAAGGGAGCCGATGGGGGTGGGCCCGCA GAGTGCGACGACAAGTTCCACTCCGACAAGGACCCCATCGTGGCGCTGTCCACATGGTGGTTCGAGGACAAAAAGCGTTGTTTTCAGTTTATCAACATAA CAGAGCCCAAGAGTGGGAAGAGTGTGTTGGCGAGAGTGGTAGACGAATGCGATTCGAGTGAAGGGTGTGATGATGACCATGATTACCAGCCACCATGTCC CAATGATGTTGTGGATGGGTCCAGTGCGGTTTGGGACGCGCTTGGGGTGAGCGGTGGGGATCGCGGTGAGATGAAAGTTACTTGGTCGGTTGTGTGA
AA sequence Show only first row Show all	>Lus10039879 pacid=23165293 polypeptide=Lus10039879 locus=Lus10039879.g ID=Lus10039879.BGIv1.0 annot-version=v1.0 MLSPHQIIITTTQYEEPYTTHHLLFTIFIAAAEAQTCKPSGHLQGKKPPPKKCNKQNNSECCVEGKLYPTYKCSPPVTKHTKATLTINSFEKGADGGGPA ECDDKFHSDKDPIVALSTWWFEDKKRCFQFINITEPKSGKSVLARVVDECDSSEGCDDDHDYQPPCPNDVVDGSSAVWDALGVSGGDRGEMKVTWSVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039879 [exp]	0	1
					Lus10000191 [exp]	1.0	0.9783
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	9.3	0.9505
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	10.5	0.9494
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	13.3	0.9479
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	15.7	0.9403
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	20.2	0.9384
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10043243 [exp]	22.2	0.8630
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	22.7	0.9272
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	24.2	0.9357
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	24.4	0.9214

Compare expression of checked genes

Lus10039879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.