Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28490 269 / 3e-90 OSM1, ATSYP61, SYP61 syntaxin of plants 61 (.1.2) AT1G27700 44 / 5e-05 Syntaxin/t-SNARE family protein (.1) AT4G30240 41 / 0.0007 Syntaxin/t-SNARE family protein (.1) AT1G79590 40 / 0.001 ATSYP52, SYP52 syntaxin of plants 52 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018642 [exp] 410 / 9e-146 AT1G28490 334 / 7e-117 syntaxin of plants 61 (.1.2) Lus10017686 [exp] 314 / 1e-107 AT1G28490 299 / 8e-103 syntaxin of plants 61 (.1.2) Lus10018643 [exp] 65 / 6e-13 ND / Lus10029845 [exp] 60 / 4e-11 AT4G38080 40 / 6e-05 hydroxyproline-rich glycoprotein family protein (.1) Lus10042963 [exp] 54 / 3e-09 ND / Lus10018645 [exp] 43 / 4e-05 ND 35 / 0.004 Lus10018703 [exp] 42 / 0.0006 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1) Lus10007766 [exp] 41 / 0.0007 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G050800 [exp] 313 / 1e-107 AT1G28490 297 / 2e-102 syntaxin of plants 61 (.1.2) Potri.011G059700 [exp] 306 / 1e-104 AT1G28490 310 / 2e-107 syntaxin of plants 61 (.1.2) Potri.006G032800 [exp] 42 / 0.0003 AT1G79590 238 / 2e-79 syntaxin of plants 52 (.1.2) Potri.014G019100 [exp] 42 / 0.0004 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10039880 pacid=23165016 polypeptide=Lus10039880 locus=Lus10039880.g ID=Lus10039880.BGIv1.0 annot-version=v1.0 ATGGGAGGAAGGAAGAGGGGTAAGACCAACCTTACCGGTTTGAAATCGGAGGAAGTTGTGGCAATGCTGGCAGCCTGCGTTATGTTAACAAGCTACATCT TTGTTGAAGACAGGGGAGATAATGTTAGTAAGATGTCTTCCGCACAAGATCCTTTTTATATTGTGAAAGAGGAGATTCAGGACTCTATTGATAAGTTGCT GTCAACATTTCAACAATGGGAACGGCTTCCTTCTAGTTCTGGAGAGCATGTAAGCCTCTCGAAGGAGCTCCTCGCTAATGCTGAGAGCATCGAGTGGCAG GTGGATGAGTTAGACAAAGCGGTTTCTGTAGCATCTCGAGATCCTGCTCTCTATGGCATTGATCATGTTAAACTTGAGAATCGAAGAAGATGGACAAGCG GTGCTCGCACTCCGGTAGGTAATGTGAAGAGGTCTGTGATAGCTGGAAGAGATGGTATTGATGGTGGAAGATCGAGCATGAATGGTATGCGGAGAGAACT TATGAGGCTGCAAAATTCGCCACAGCCAGTAGCATCCAACCAGTACAACCATAACGATGATTTCATACAATCTGAATCAGACAGACAATTCCTTCTTATC AAGCAACAAGACGAAGAGCTGGACGAACTTAGTGCAAGTGTAGAGAGAATTGGCGGTGTTGGGCTTACCATTCATGAAGAACTTCTTTCACAGGAAAAGA TCATCGATGATCTAGGCAATGAAATGGACAGTACAGCTATCCGACTCGATTTTGTCCAGCCGACCCTACCGATGCCGACTCTGCCTACCACCGGACTGCC GCCGCTCCCTGCTGCCGGTGCCATTCCGGCGATTCCTGTGTCCATCCCTAAGGTTTCACTGCCGCCGTTGCCTGCCAACTTCCCGACGATCCCGTTCACC ATGCCTTCCATCCCTGGCCTCTTTGCACCACCTCCTAGCAACTAG
AA sequence Show only first row Show all	>Lus10039880 pacid=23165016 polypeptide=Lus10039880 locus=Lus10039880.g ID=Lus10039880.BGIv1.0 annot-version=v1.0 MGGRKRGKTNLTGLKSEEVVAMLAACVMLTSYIFVEDRGDNVSKMSSAQDPFYIVKEEIQDSIDKLLSTFQQWERLPSSSGEHVSLSKELLANAESIEWQ VDELDKAVSVASRDPALYGIDHVKLENRRRWTSGARTPVGNVKRSVIAGRDGIDGGRSSMNGMRRELMRLQNSPQPVASNQYNHNDDFIQSESDRQFLLI KQQDEELDELSASVERIGGVGLTIHEELLSQEKIIDDLGNEMDSTAIRLDFVQPTLPMPTLPTTGLPPLPAAGAIPAIPVSIPKVSLPPLPANFPTIPFT MPSIPGLFAPPPSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10039880 [exp]	0	1
					Lus10018643 [exp]	1.0	0.9796
AT3G11430		ATGPAT5, GPAT5	glycerol-3-phosphate acyltrans...		Lus10040277 [exp]	2.0	0.9711
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	2.4	0.9597
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10014681 [exp]	4.5	0.9640
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032554 [exp]	5.2	0.9649
AT5G13580		ABCG6	ATP-binding cassette G6, ABC-2...		Lus10001972 [exp]	6.3	0.9639
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	6.9	0.9455
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10034813 [exp]	7.5	0.9594
AT1G05450			Bifunctional inhibitor/lipid-t...		Lus10021911 [exp]	8.0	0.9544
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019361 [exp]	8.1	0.9293

Compare expression of checked genes

Lus10039880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.