Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033722 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039884 pacid=23165159 polypeptide=Lus10039884 locus=Lus10039884.g ID=Lus10039884.BGIv1.0 annot-version=v1.0 ATGACACGACTTCCAAAGGTGGTTCGTGAAACGGCGGCGCAGGGGGTTAGGCTTCGGTCCAAAATTCGACGATCTGTCTCTGTAAATGTCATGATGTGGA TGGAGTACGGTGCTAACAGTTTGGGGAGGCAACTTCTTCAGATTCTGTTGGTTGCTGCGATACAGAGTGTAACAGTCCTGGAACCCCTGTGGGACTCCTC GAAAGTGATAGTTCTGAGATACATACACCTTCAGTTTTTCCTCTTGTCTTTCTTGCAAGAAGAAGACGAGGTCGATGAGGATGAGGCCTTTGAAGCTGCT ACGCGGGAAGTGGTCGGGATAATCGAGATGGAATGCAACGGCTCAAGGGAGGAAGGTATAGCAGTAGCGATTTCGACGGCCAAGGAGCTCAAGGGATAA
AA sequence Show only first row Show all	>Lus10039884 pacid=23165159 polypeptide=Lus10039884 locus=Lus10039884.g ID=Lus10039884.BGIv1.0 annot-version=v1.0 MTRLPKVVRETAAQGVRLRSKIRRSVSVNVMMWMEYGANSLGRQLLQILLVAAIQSVTVLEPLWDSSKVIVLRYIHLQFFLLSFLQEEDEVDEDEAFEAA TREVVGIIEMECNGSREEGIAVAISTAKELKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039884 [exp]	0	1
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	7.4	0.6705
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	23.3	0.6530
					Lus10042018 [exp]	49.6	0.5671
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031769 [exp]	63.7	0.5629
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Lus10027275 [exp]	66.0	0.5632
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013069 [exp]	83.1	0.5587
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	101.7	0.5479
					Lus10002746 [exp]	146.7	0.5324
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10005021 [exp]	214.1	0.4987

Compare expression of checked genes

Lus10039884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.