Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20580 1372 / 0 RPN1A, AtRPN1a 26S proteasome regulatory subunit S2 1A (.1) AT4G28470 1337 / 0 RPN1B, AtRPN1b 26S proteasome regulatory subunit S2 1B (.1) AT4G08140 115 / 1e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002169 [exp] 1615 / 0 AT2G20580 1476 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014800 [exp] 1386 / 0 AT2G20580 1399 / 0.0 26S proteasome regulatory subunit S2 1A (.1) Potri.007G137200 [exp] 1363 / 0 AT2G20580 1358 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01851 [flax] [poplar] PC_rep Proteasome/cyclosome repeat
Representative CDS sequence Show only first row Show all	>Lus10039885 pacid=23165023 polypeptide=Lus10039885 locus=Lus10039885.g ID=Lus10039885.BGIv1.0 annot-version=v1.0 ATGGCGCCGGAACTGAACGGTGGTGCCAGTGGCAGCGGCACTAAGAAGGACGACGCTCCGGCCAAGGACCAAAAGAAAAAGGACGACAAGAAGGACGAGG ATCTTTCAGAGGAGGATTTGGCGTTGAAGCAGCAGCTGGAATTGTATGTTGAAAGGGTTCAGGATGCTGATCCTGGCTTGCAGAAGGTAGCACTGGAGAG TATGAGGCAAGAAATTCGGACCTCAACAAGCTCAATGACTTCCGTACCAAAGCCGTTGAAGTTTCTCCGGCCACATTATGGAACGCTAAAAGCGTTTTAC AATACAATGGCTGAATCAGATCTAAAGAAATATTTGGCCGATATCCTTTCTGTCTTAGCCCTGACCATGTCTGCCGAAGGAGAACGGGAAAGCTTAAAGT ATAGGTTGTTGGGTTCGGAGGGGGACATTGGTTCATGGGGCCATGAATATGTCAGGAACTTGGCTGGAGAAATCGGACAAGAATATGCAAAAAGACAGGC TGAAGAAGTGGCAATCGATGATGTAATGGAGCTTGTACAGCAGATTGTTGCTTTTCATATGAAGCACAATGCTGAACCAGAAGCAGTGGACCTTCTAATG GAGGTCGAAGACCTAGATCTTTTGACTGAGCATGTCGACAGTACTAATTTCAAGAGAACCTGTCTGTACCTCACTAGTGCTGCAAGATACCTTCCCGGGC CTGATGATGTGCTAGTTTTGGATATTGCATACATGATATACCTAAAGTTTGAGGAATATGCAAATTGTCTTCAAATTGCCTTGTCTCTTGACAACCTTCA GTATGTGAAGCAGGTTTTTACTTCTTGTGATGACAATCTTCGAAAGAAGCAATTCTGTTACATCCTTGGTAGACAGGGAACAACATTTGAGCTGGATGAA GATATGTGTGCTGATGATGAAGAGAGATACATAATGCAAGACATCATTAACAATGCCAAGTTAAGTGAAGGTTATCTTGCACTTGCTCGTGATATAGAAG TCATGGAACCGAAATCTCCTGAAGATATCTACAAGGCACATTTACTTGATGGCCGGGCGAGTGCTGGTGCCAGTGTTGATTCAGCAAGACAGAATTTGGC TGCTACATTTGTCAATGCGTTTGTAAATGCGGGATTTGGTCAGGATAAGCTGATGACAGTTCCAGCAGACTCTGCGAGTGGGGGTTCATCTGGAAATTGG CTTTTCAAGAACAAAGAGCATGGAAAAGCCAGTGCTGCAGCAAGTATGGGTATGATTTTGTTGTGGGACGTGGACACTGGTCTTGCTCAAATTGACAAGT ATTTCCATAGCAATGACAACTATGTGATCGCTGGTGCTCTACTAGGGGTTGGCATTGTCAACTGTAGTGTGAAGAATGACTGTGATCCTGCTCTGGCATT GTTAGCTGATTATGTGGATAAAGAGGATCCATTTATCAGAATTGGTGCAATTATGGGTTTGGGAATTGCATATGCTGGAGCTCAAAATGAACAGATACGC AGCAAATTGACCCCCATACTTAATGATGCCAAAACCCCACTTGACGTAGTTGCTTTCACTACAATCTCCTTGGGTTTGATATATGTTGGGTCCTGCAATG AAGAGGTTGCGCAAGCAATTATATTTGCTCTGATGGACAGAAGTGAATCAGAATTGCAAGATCCTCTCACGAGATTTTTGCCACTTGGTCTTGGACTGTT ATACCTTGGGAAGCAGGAAAGTGTTGAGGCTACAGCTGAGGTCTCAAAGACATTTAATGAGAAGATTAGAAAGTATTGTGATATGACCTTACTTTCTTGT GCTTATGCTGGAACTGGAAATGTTCTTAAGGTTCAACACCTTCTGGGGAATTGCGCTCAGCATCTTGAGAAGGGTGAAAACCACCAAGGACCAGCTGTGC TTGGAATTGCAATGGTGGCTATGGCTGAGGAGTTGGGAGTTGAAATGGCAATTCGTTCATTAGAGCATCTTTTGCAGTATGGTGAACAAAACATCCGGAA GTCAGTTCCTTTGGCTCTGGCCCTTCTCTGCATATCAAACCCAAAGGTCAATGTTATGGACACACTAAGCAGACTTAGTCATGATGCTGATACCGAAGTT GCATCGGCTGCAATCATCGCCTTAGGTCTGATCGGTGCAGGGACCAACAATGCTCGTATTGCTGGCATGCTCCGCAATCTTTCGAGTTATTACTACAAAG ATGCAACGCTTCTCTTCTGTGTGAGACTTGCCCAAGGTCTTGTACATCTAGGCAAGGGCTTGTTGACTCTCAACCCTTACCATTCAGATCGGTTCTTGCT ATCACCTATGGCACTTGCTGGTCTAGTAACCTTCTTGCATGCGTGTCTCGAAATGAAGGCCATGGTTTTGGGGAGATATCACATCGTCCTCTACTTCCTC GTCTTAGCAATGCAGCCGAGAATGTTGATGACCGTTGATGAGAACTTGAAGCCTCTGTCCGTACCAGTACGGGTCGGTCAAGCTGTGGATGTTGTTGGTC AGGCTGGAAGGCCGAAGACAATTACTGGTTTCCAGACGCACTCAACACCTGTTCTCTTGGCAGCTGGCGACCGGGCCGAACTAGCTACTGAGAAGTACAT TCCACTGTCGCCGATCTTGGAAGGATTCGTAATCTTGAAGGAGAATCCGGATTACCGAGAGGAGAGCTAG
AA sequence Show only first row Show all	>Lus10039885 pacid=23165023 polypeptide=Lus10039885 locus=Lus10039885.g ID=Lus10039885.BGIv1.0 annot-version=v1.0 MAPELNGGASGSGTKKDDAPAKDQKKKDDKKDEDLSEEDLALKQQLELYVERVQDADPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAFY NTMAESDLKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIGQEYAKRQAEEVAIDDVMELVQQIVAFHMKHNAEPEAVDLLM EVEDLDLLTEHVDSTNFKRTCLYLTSAARYLPGPDDVLVLDIAYMIYLKFEEYANCLQIALSLDNLQYVKQVFTSCDDNLRKKQFCYILGRQGTTFELDE DMCADDEERYIMQDIINNAKLSEGYLALARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVPADSASGGSSGNW LFKNKEHGKASAAASMGMILLWDVDTGLAQIDKYFHSNDNYVIAGALLGVGIVNCSVKNDCDPALALLADYVDKEDPFIRIGAIMGLGIAYAGAQNEQIR SKLTPILNDAKTPLDVVAFTTISLGLIYVGSCNEEVAQAIIFALMDRSESELQDPLTRFLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSC AYAGTGNVLKVQHLLGNCAQHLEKGENHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRKSVPLALALLCISNPKVNVMDTLSRLSHDADTEV ASAAIIALGLIGAGTNNARIAGMLRNLSSYYYKDATLLFCVRLAQGLVHLGKGLLTLNPYHSDRFLLSPMALAGLVTFLHACLEMKAMVLGRYHIVLYFL VLAMQPRMLMTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLSPILEGFVILKENPDYREES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	0	1
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	3.0	0.8556
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	4.9	0.9031
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	8.8	0.8670
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	9.6	0.8794
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	13.7	0.8834
AT3G15180			ARM repeat superfamily protein...		Lus10027294 [exp]	15.0	0.7596
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	22.2	0.8774
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	22.3	0.8348
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10002063 [exp]	25.2	0.8379
AT1G29370			Kinase-related protein of unkn...		Lus10007338 [exp]	26.5	0.8049

Compare expression of checked genes

Lus10039885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.