Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42550 727 / 0 PMI1 plastid movement impaired1 (.1) AT5G20610 124 / 1e-28 unknown protein AT5G26160 113 / 2e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002170 [exp] 1433 / 0 AT1G42550 818 / 0.0 plastid movement impaired1 (.1) Lus10021568 [exp] 111 / 1e-24 AT5G20610 827 / 0.0 unknown protein Lus10017162 [exp] 106 / 6e-23 AT5G20610 762 / 0.0 unknown protein Lus10025003 [exp] 58 / 3e-08 AT5G20610 97 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G255500 [exp] 972 / 0 AT1G42550 754 / 0.0 plastid movement impaired1 (.1) Potri.002G006100 [exp] 957 / 0 AT1G42550 796 / 0.0 plastid movement impaired1 (.1) Potri.006G224200 [exp] 118 / 9e-27 AT5G26160 641 / 0.0 unknown protein Potri.006G145500 [exp] 113 / 3e-25 AT5G20610 565 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039886 pacid=23165309 polypeptide=Lus10039886 locus=Lus10039886.g ID=Lus10039886.BGIv1.0 annot-version=v1.0 ATGGCCGCTTCATCAGGCTCATCCTCAGCCAGGAGGAACTCCAACACGCAGCTCCTCGAAGAGCTCGAAACACTCAGCCAGTCACTCTACCAGGCTCACA CTTCCAGCAGGAGAACAAACTCCTTAGCCCTCCCAAGGTCTTCACTCCCTTCCTTAATCTCCACTCATGAAGACCAACAGCCAATCCCGATTGCTAAACC CGACAGCACTCGATCCACCTCGCGCCCTCGGAGGATGTCCTTATCGCCCTGGCGCTCCAAGCCTAAGCTCGATGATTTCGACAACAATAACAACAGTAGC AGGAGCAGCAAACCTGTTGTTCAGAAACTCGGACCGACGAATAAAGCTGAAGTGGTAGAGAAGAAAGGGATATGGAATTGGAAGCCAATTCGAGCACTTT CCCACATTGGGATGCAGAAACTGAGCTGCTTGTTCTCAGTTGAGGTTGTTGCTATTCAGGGTTTGCCATCTTCGATGAATGGACTCAGGCTGTCGGTATG TGTCAGGAAGCAAGAGACTAAAGACGGGTCTGTACACACTATGCCTTCCAGGGTTTCGCAGGGAGGTGCTGATTTTGAAGAGACGCTTTTCCTGAAATGT CATGTTTACTGCACCACCACTGCTAATAAACAGCTGAAATTCGAGCCGAGGGTTTTCTACATCTATGTGTTTGCTGTGGATGCTGAGGAACTTGATTTCG GTAGGAGCTCTGTGGATTTGAGTGAGTTGATTCAGGAATCCATGGAGAAGAATCTGCAAGGAACAAGGATTCGTCAGTGGGATACTACTTTTACACTGGC GGGAAAGGCTAAGGGAGCTGAAGTTGTGCTGAAGCTTGGGTTTCAGGTTATGGAGAAGGATGGTGGGATTGATATATACAGCAGTCAGGTTGCAGGTTCT TATGAAGGGCTGAAAGGTAGTAAAGTGAAGAGCTTTTTACCTTCGGTTGGTCGTAAGCAGTCGAAGATGTCGTTCAGTGTGACGAGTCCCAGGATTACTA GTAGAGCTGAGGCTTGGACACCTTCACAGACGAGATCACCGGCTGATCTTCAAGGAATTGATGACTTGAATCTCGACGAGCCACCTGCCCCGGCTGCTGT TGTTGTACCTTCTTCTTCAGAAGAGCAGAAATTGGATGAGGTGGATCTTCCGGAGTTTGAGGTGGTTTATAAAGGAGTGGAGATTTCTGAGGAGAAAGAA CAAGAGAGTGATGGAGATGGAGACTATTCTGTGGAGAATTTGGAAGAAGAAAAGTCTGCTGCTTCGAGCGAGGTTGTGAAGGAGGTCGTGCATCATGATC AGGTTCACTTGAATAGGTTATCCGAGCTCGATTCGATTGCTCAGCAGATAAAGGTTCTTGAGTCCACTCTTGAGTCCATGATGGGGGAGGAAAAGTCTGA AAATGCAGAAGAAGATGAGATTGAGTCACAGAAGCTTGATGAAGATGAGGAAACAGTGACAAAGGAGTTTCTACAGATGCTTGAAGATGAAGAAGAAGGA AATGAGTTCAAATTCAAGTTCAAGTTCAACCAACCTGAAGTTCCTCAACTGCATCTTGATGAAGGTGATGGTAATGGTAATGATTCAGCTGAAGTTGATT CCAAAGGTTATATCTCCGATCTCGGGAAGGGATTAACGTGCGTAGTTCAAACCCGGGATGGGGGATACTTGGCAGCAATGAATCCACTTGATGCTGTAGT TACGAAGAAAGAGACTCCAAAGCTGGCAATGCAGCTTTCGAAACCGCTTGTTCTTGCACCGAATCAATCATCTATAAGCGGGTTTGAGCTGTTTCAGAAG ATGGCAGCGGTTGGGTATGAAGAGCTGAGTTCTCAGATTTTGTCACAGATGCCACTCGACGAGCTGACAGGGAAAACTGCGGAACAGGTTGCATTTGAAG GGATAGCTTCAGCAATCATCCAAGGGAGGAACAAAGAAGGCGCTACCTCGACTGCTGCTCGAACAATCACATCAGTGAAAGCCATGGCAAATGCATTGAG CTCCGGAAGGAAAGACAGGATCTCGACCGGAATATGGAACGTGAGGGAGGAGCCTCTGACTGCAGAGGAGGTCATAGCCTTCTCGTTGCAGAAGATCGAG GCCATGGCCATTGAAGCATTGAGAATTCAGGCAGACATGGGTGAGGAAGATGCTCCATTTGATGTTTCTCCACTTCCTGGAAAAACTGCAACTCAAAACC AACCTCTGGCATCTGCAGTTCCTCTGGAAGAGTGGATGAGAAAAAGTGATGACAAATCAGTAGAGACGGATGCATTTACAGTAGCTGTGTGTGTTCAGCT CCGTGATCCTTTGAGGCGATATGAAGCAGTTGGAGGGACTGTTATGGCACTTATCCATGGAAGCAAAGCCGAAATCGATGACAAATACGAAGAAGAGAAG AAGTTCAAGGTCAAGAGCTTACATCTTGGAGGTTTGAAGATGAGCACAAAAGGGAAGAGGAATGCATTTGATACAGAACGGCAAAGGTTGACTGCAATGC AATGGCTGGTATCTTATGGAATAGTGAAGGGAGGGAAGAAGGGGAAGCATACGTCAGGGAAAGAGCAGGATGTGCTGTGGAGCATTTCGTCGAGAATCAT GGCGGATATGTGGCTGAAATCAATGAGGAATCCAGATGTTAAGCTGGTGGTCAAGTAA
AA sequence Show only first row Show all	>Lus10039886 pacid=23165309 polypeptide=Lus10039886 locus=Lus10039886.g ID=Lus10039886.BGIv1.0 annot-version=v1.0 MAASSGSSSARRNSNTQLLEELETLSQSLYQAHTSSRRTNSLALPRSSLPSLISTHEDQQPIPIAKPDSTRSTSRPRRMSLSPWRSKPKLDDFDNNNNSS RSSKPVVQKLGPTNKAEVVEKKGIWNWKPIRALSHIGMQKLSCLFSVEVVAIQGLPSSMNGLRLSVCVRKQETKDGSVHTMPSRVSQGGADFEETLFLKC HVYCTTTANKQLKFEPRVFYIYVFAVDAEELDFGRSSVDLSELIQESMEKNLQGTRIRQWDTTFTLAGKAKGAEVVLKLGFQVMEKDGGIDIYSSQVAGS YEGLKGSKVKSFLPSVGRKQSKMSFSVTSPRITSRAEAWTPSQTRSPADLQGIDDLNLDEPPAPAAVVVPSSSEEQKLDEVDLPEFEVVYKGVEISEEKE QESDGDGDYSVENLEEEKSAASSEVVKEVVHHDQVHLNRLSELDSIAQQIKVLESTLESMMGEEKSENAEEDEIESQKLDEDEETVTKEFLQMLEDEEEG NEFKFKFKFNQPEVPQLHLDEGDGNGNDSAEVDSKGYISDLGKGLTCVVQTRDGGYLAAMNPLDAVVTKKETPKLAMQLSKPLVLAPNQSSISGFELFQK MAAVGYEELSSQILSQMPLDELTGKTAEQVAFEGIASAIIQGRNKEGATSTAARTITSVKAMANALSSGRKDRISTGIWNVREEPLTAEEVIAFSLQKIE AMAIEALRIQADMGEEDAPFDVSPLPGKTATQNQPLASAVPLEEWMRKSDDKSVETDAFTVAVCVQLRDPLRRYEAVGGTVMALIHGSKAEIDDKYEEEK KFKVKSLHLGGLKMSTKGKRNAFDTERQRLTAMQWLVSYGIVKGGKKGKHTSGKEQDVLWSISSRIMADMWLKSMRNPDVKLVVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	0	1
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10002170 [exp]	1.0	0.9690
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10005411 [exp]	2.0	0.9469
AT4G02920			unknown protein		Lus10042685 [exp]	4.9	0.9245
AT1G32080		AtLrgB	membrane protein, putative (.1...		Lus10010412 [exp]	4.9	0.9444
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10015278 [exp]	7.6	0.8957
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	7.7	0.9120
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10017195 [exp]	11.3	0.9278
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010012 [exp]	11.7	0.8919
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	12.0	0.9182
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	12.2	0.8883

Compare expression of checked genes

Lus10039886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.