Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44200 299 / 1e-102 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G10400 57 / 2e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G66260 56 / 9e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 53 / 6e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G18510 53 / 7e-08 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 51 / 7e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 49 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G37720 51 / 3e-07 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT5G61030 50 / 6e-07 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G73530 48 / 9e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017682 [exp] 344 / 5e-120 AT5G44200 358 / 9e-126 CAP-binding protein 20 (.1.2) Lus10033636 [exp] 259 / 9e-87 AT5G44200 298 / 1e-102 CAP-binding protein 20 (.1.2) Lus10019838 [exp] 61 / 2e-10 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10041728 [exp] 54 / 4e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002835 [exp] 54 / 7e-08 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 54 / 8e-08 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10024413 [exp] 52 / 1e-07 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 52 / 1e-07 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10024024 [exp] 51 / 2e-07 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014600 [exp] 318 / 4e-110 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.007G137400 [exp] 313 / 6e-108 AT5G44200 327 / 9e-114 CAP-binding protein 20 (.1.2) Potri.009G160300 [exp] 53 / 5e-09 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 54 / 9e-09 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G087000 [exp] 54 / 4e-08 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.007G028300 [exp] 53 / 9e-08 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G124200 [exp] 52 / 1e-07 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.005G125300 [exp] 52 / 2e-07 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G025400 [exp] 52 / 2e-07 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.016G093944 [exp] 50 / 6e-07 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10039887 pacid=23165170 polypeptide=Lus10039887 locus=Lus10039887.g ID=Lus10039887.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTATTCAAGGACCCGACGAAGCTGTCGGCTTATAGGGACAGACGATTTTCTGGGGATCAGGAGGAGTTTGAGCATGCGCTGCATTCCTCGA CTACTGTTTATATTGGGAATATGTCATTCTACACGACGGAAGAGCAAGTTTATGAGCTGTTCACTCGGGCTGGGGAAGTTAAGAAGATAATCATGGGGTT GGATAAGAACACCAAAACTCCTTGTGGCTTTTGCTTCGTCCTGTACTATTCCAGAGAAGATACCCAGGATGCTGTAAAATATGTAAGTGGTACAATTCTT GACGACCGCCCCATTCGTGTTGACTTCGATTGGGGATTTCAAGAAGGGAGGCAGTGGGGTCGAGGTCGAAGTGGTGGACAAGTAAGATGGATTTCCTTTC TGTGTCCAACATTTCTGCCTTATCCAGTGGACTTCCTTTCCCAGAAATTTATTGGACTTTTCTCTGCAATTTGCAGGGGTGGTTATGGGAAGTTGGTGCA ACAAGAACTTGAAGCTCAAAGGCAGCTTGTAGATTATGGGACTGGATCTTTGGGTTCTTTTCCTCCGCCTATTATGCCTCCTCAATATGGCAGGCATGGA GGCTCAGGTCGTGGTGGTGTTCATCGGCAAAATAGAGATTTCCATCGAAAGCGATACCGAGATGATGACCGACATGCAAGTGAGCCTTCAAACAGGACAT CCGACCATGAACCTCGAAGAAATTCTGACCCTGAATCCCGACCGGAGAAGAATCCACGTTTTCGAGAAAGCGGCGACTCTGATGAGGAAGATGATGAGAA CAAGCGAAAACCATAG
AA sequence Show only first row Show all	>Lus10039887 pacid=23165170 polypeptide=Lus10039887 locus=Lus10039887.g ID=Lus10039887.BGIv1.0 annot-version=v1.0 MASLFKDPTKLSAYRDRRFSGDQEEFEHALHSSTTVYIGNMSFYTTEEQVYELFTRAGEVKKIIMGLDKNTKTPCGFCFVLYYSREDTQDAVKYVSGTIL DDRPIRVDFDWGFQEGRQWGRGRSGGQVRWISFLCPTFLPYPVDFLSQKFIGLFSAICRGGYGKLVQQELEAQRQLVDYGTGSLGSFPPPIMPPQYGRHG GSGRGGVHRQNRDFHRKRYRDDDRHASEPSNRTSDHEPRRNSDPESRPEKNPRFRESGDSDEEDDENKRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	0	1
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	2.0	0.8957
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	3.7	0.8808
AT1G67170			unknown protein		Lus10019966 [exp]	4.2	0.8783
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	5.5	0.8680
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10022716 [exp]	7.1	0.8037
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	9.2	0.8506
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	10.2	0.8687
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	10.9	0.8471
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	11.3	0.8634
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10041015 [exp]	12.3	0.8464

Compare expression of checked genes

Lus10039887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.