Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28440 152 / 3e-48 Nucleic acid-binding, OB-fold-like protein (.1) AT2G33845 152 / 9e-48 Nucleic acid-binding, OB-fold-like protein (.1) AT1G03810 141 / 6e-44 Nucleic acid-binding, OB-fold-like protein (.1) AT1G23750 136 / 3e-42 Nucleic acid-binding, OB-fold-like protein (.1) AT1G10590 129 / 4e-39 Nucleic acid-binding, OB-fold-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002172 [exp] 228 / 4e-78 AT2G33845 189 / 1e-62 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030617 [exp] 138 / 8e-43 AT1G23750 229 / 7e-79 Nucleic acid-binding, OB-fold-like protein (.1) Lus10030871 [exp] 137 / 3e-42 AT1G23750 226 / 2e-77 Nucleic acid-binding, OB-fold-like protein (.1) Lus10015411 [exp] 137 / 7e-42 AT2G33845 186 / 4e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013989 [exp] 134 / 8e-41 AT4G28440 186 / 3e-61 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029155 [exp] 128 / 7e-39 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1) Lus10013010 [exp] 127 / 1e-38 AT1G23750 206 / 1e-69 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014400 [exp] 189 / 5e-63 AT4G28440 194 / 9e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.007G137600 [exp] 183 / 1e-60 AT4G28440 193 / 2e-64 Nucleic acid-binding, OB-fold-like protein (.1) Potri.011G114800 [exp] 148 / 9e-47 AT2G33845 214 / 3e-72 Nucleic acid-binding, OB-fold-like protein (.1) Potri.001G396100 [exp] 147 / 2e-46 AT1G23750 194 / 5e-65 Nucleic acid-binding, OB-fold-like protein (.1) Potri.010G041000 [exp] 141 / 3e-44 AT1G23750 234 / 1e-80 Nucleic acid-binding, OB-fold-like protein (.1) Potri.008G189900 [exp] 140 / 1e-43 AT1G23750 239 / 9e-83 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039889 pacid=23165362 polypeptide=Lus10039889 locus=Lus10039889.g ID=Lus10039889.BGIv1.0 annot-version=v1.0 ATGGCGACAGTCCCTGAAAAGAAGAAGCCCGTGTTTGTAAAGGTAGGGACCTTGACCCCAGGCACTAGTGGGCACAACCTGACTGTCAAAGTCGTCGAGT CCAAAGACGTCCCTGCTCCCAAGCCCCGCCGTGGACCTCTGTCTCTTTCCCAGCGCCCTGTCCGCCCTACGCGCATCGCCGAGTGCCTGGTCGGCGATGA CACTGCCTCCATCGTCTTCACCGCTCGTAACGAGCAAGTTGACCTCATGACACCCGGTGCCACCATTATCCTACGCAATGCAAAGATTGACATGTTCAAG GGGACAATGAGGCTTGCAGTGGACAAGTGGGGACGTGTGGAGGTTACTGAAGCAGCTGAATTTGAGGTTACAGACGGTAACAACCTTTCTCTGATCGAGT ATGAGCTGGTCAATGTTTAA
AA sequence Show only first row Show all	>Lus10039889 pacid=23165362 polypeptide=Lus10039889 locus=Lus10039889.g ID=Lus10039889.BGIv1.0 annot-version=v1.0 MATVPEKKKPVFVKVGTLTPGTSGHNLTVKVVESKDVPAPKPRRGPLSLSQRPVRPTRIAECLVGDDTASIVFTARNEQVDLMTPGATIILRNAKIDMFK GTMRLAVDKWGRVEVTEAAEFEVTDGNNLSLIEYELVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	0	1
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	2.0	0.8987
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	4.0	0.8876
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	8.2	0.8386
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	12.4	0.8306
AT1G09520			unknown protein		Lus10005290 [exp]	12.7	0.8055
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	15.2	0.8424
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10007784 [exp]	16.6	0.7329
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	19.0	0.7675
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	21.2	0.7417
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	22.3	0.7821

Compare expression of checked genes

Lus10039889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.